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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 223, 385 |
| AciI | CCGC | 3 cut(s) | 120, 446, 481 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 202, 223, 385 |
| AgsI | TTSAA | 1 cut(s) | 158 |
| AhlI | ACTAGT | 1 cut(s) | 110 |
| AjiI | CACGTC | 1 cut(s) | 375 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 73, 105 |
| AluBI | AGCT | 1 cut(s) | 117 |
| AluI | AGCT | 1 cut(s) | 117 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AoxI | GGCC | 1 cut(s) | 214 |
| ApeKI | GCWGC | 5 cut(s) | 117, 172, 238, 483, 530 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 85 |
| AsuC2I | CCSGG | 1 cut(s) | 467 |
| AsuHPI | GGTGA | 1 cut(s) | 371 |
| AxyI | CCTNAGG | 1 cut(s) | 147 |
| BalI | TGGCCA | 1 cut(s) | 216 |
| BanII | GRGCYC | 1 cut(s) | 472 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BbvI | GCAGC | 5 cut(s) | 104, 184, 250, 470, 542 |
| BccI | CCATC | 1 cut(s) | 206 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 330, 364 |
| BcnI | CCSGG | 1 cut(s) | 467 |
| BcuI | ACTAGT | 1 cut(s) | 110 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BisI | GCNGC | 6 cut(s) | 118, 173, 239, 481, 484, 531 |
| BlsI | GCNGC | 6 cut(s) | 119, 174, 240, 482, 485, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 467 |
| BmgBI | CACGTC | 1 cut(s) | 375 |
| BmrFI | CCNGG | 1 cut(s) | 467 |
| BmsI | GCATC | 2 cut(s) | 43, 220 |
| BpuMI | CCSGG | 1 cut(s) | 467 |
| BsaBI | GATNNNNATC | 1 cut(s) | 513 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 73, 103, 329, 359 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 202, 223, 385 |
| Bse1I | ACTGG | 2 cut(s) | 82, 304 |
| Bse21I | CCTNAGG | 1 cut(s) | 147 |
| Bse8I | GATNNNNATC | 1 cut(s) | 513 |
| BseGI | GGATG | 3 cut(s) | 211, 217, 235 |
| BseJI | GATNNNNATC | 1 cut(s) | 513 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 202, 223, 385 |
| BseMII | CTCAG | 1 cut(s) | 138 |
| BseNI | ACTGG | 2 cut(s) | 82, 304 |
| BseRI | GAGGAG | 1 cut(s) | 440 |
| BseXI | GCAGC | 5 cut(s) | 104, 184, 250, 470, 542 |
| BsgI | GTGCAG | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsiSI | CCGG | 1 cut(s) | 466 |
| BslFI | GGGAC | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 202, 223, 385 |
| BsmFI | GGGAC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 2 cut(s) | 289, 472 |
| Bsp143I | GATC | 1 cut(s) | 388 |
| BspACI | CCGC | 3 cut(s) | 120, 446, 481 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BspCNI | CTCAG | 1 cut(s) | 139 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BsrI | ACTGG | 2 cut(s) | 82, 304 |
| BssMI | GATC | 1 cut(s) | 388 |
| Bst4CI | ACNGT | 2 cut(s) | 416, 538 |
| BstC8I | GCNNGC | 1 cut(s) | 472 |
| BstDEI | CTNAG | 1 cut(s) | 147 |
| BstF5I | GGATG | 3 cut(s) | 211, 217, 235 |
| BstKTI | GATC | 1 cut(s) | 391 |
| BstMBI | GATC | 1 cut(s) | 388 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 471, 480 |
| BstSCI | CCNGG | 1 cut(s) | 465 |
| BstV1I | GCAGC | 5 cut(s) | 104, 184, 250, 470, 542 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| Bsu36I | CCTNAGG | 1 cut(s) | 147 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| BtrI | CACGTC | 1 cut(s) | 375 |
| BtsCI | GGATG | 3 cut(s) | 211, 217, 235 |
| BtsI | GCAGTG | 1 cut(s) | 240 |
| BtsIMutI | CAGTG | 2 cut(s) | 240, 543 |
| Cac8I | GCNNGC | 1 cut(s) | 472 |
| CseI | GACGC | 1 cut(s) | 178 |
| CviAII | CATG | 2 cut(s) | 15, 185 |
| CviJI | RGCY | 9 cut(s) | 30, 117, 175, 195, 216, 280, 403, 470, 533 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 117, 175, 195, 216, 280, 403, 470, 533 |
| DdeI | CTNAG | 1 cut(s) | 147 |
| DpnI | GATC | 1 cut(s) | 390 |
| DpnII | GATC | 1 cut(s) | 388 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| EciI | GGCGGA | 1 cut(s) | 461 |
| Eco24I | GRGCYC | 1 cut(s) | 472 |
| Eco81I | CCTNAGG | 1 cut(s) | 147 |
| EcoT22I | ATGCAT | 1 cut(s) | 58 |
| EcoT38I | GRGCYC | 1 cut(s) | 472 |
| FaeI | CATG | 2 cut(s) | 18, 188 |
| FaiI | YATR | 9 cut(s) | 9, 11, 16, 27, 138, 179, 186, 408, 478 |
| FaqI | GGGAC | 1 cut(s) | 385 |
| FatI | CATG | 2 cut(s) | 14, 184 |
| Fnu4HI | GCNGC | 6 cut(s) | 118, 173, 239, 481, 484, 531 |
| FokI | GGATG | 3 cut(s) | 218, 224, 242 |
| FriOI | GRGCYC | 1 cut(s) | 472 |
| Fsp4HI | GCNGC | 6 cut(s) | 118, 173, 239, 481, 484, 531 |
| FspBI | CTAG | 1 cut(s) | 111 |
| GluI | GCNGC | 6 cut(s) | 118, 173, 239, 481, 484, 531 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HapII | CCGG | 1 cut(s) | 466 |
| HgaI | GACGC | 1 cut(s) | 178 |
| Hin1II | CATG | 2 cut(s) | 18, 188 |
| HinfI | GANTC | 3 cut(s) | 332, 344, 353 |
| HpaII | CCGG | 1 cut(s) | 466 |
| HphI | GGTGA | 1 cut(s) | 371 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 93, 337, 352, 519 |
| Hpy188III | TCNNGA | 2 cut(s) | 146, 299 |
| HpyAV | CCTTC | 2 cut(s) | 356, 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 416, 538 |
| HpyCH4IV | ACGT | 1 cut(s) | 374 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 56, 233, 238 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 471, 480 |
| HpyF3I | CTNAG | 1 cut(s) | 147 |
| HpySE526I | ACGT | 1 cut(s) | 374 |
| Hsp92II | CATG | 2 cut(s) | 18, 188 |
| Kzo9I | GATC | 1 cut(s) | 388 |
| LmnI | GCTCC | 2 cut(s) | 284, 448 |
| Lsp1109I | GCAGC | 5 cut(s) | 104, 184, 250, 470, 542 |
| LweI | GCATC | 2 cut(s) | 43, 220 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeII | ACGT | 1 cut(s) | 374 |
| MaeIII | GTNAC | 2 cut(s) | 166, 393 |
| MalI | GATC | 1 cut(s) | 390 |
| MboI | GATC | 1 cut(s) | 388 |
| MboII | GAAGA | 1 cut(s) | 442 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MhlI | GDGCHC | 2 cut(s) | 289, 472 |
| MlsI | TGGCCA | 1 cut(s) | 216 |
| MluCI | AATT | 1 cut(s) | 180 |
| MluNI | TGGCCA | 1 cut(s) | 216 |
| MlyI | GAGTC | 3 cut(s) | 341, 353, 362 |
| MmeI | TCCRAC | 3 cut(s) | 116, 288, 315 |
| MnlI | CCTC | 8 cut(s) | 142, 220, 241, 260, 331, 362, 418, 451 |
| Mox20I | TGGCCA | 1 cut(s) | 216 |
| Mph1103I | ATGCAT | 1 cut(s) | 58 |
| MroXI | GAANNNNTTC | 1 cut(s) | 85 |
| MscI | TGGCCA | 1 cut(s) | 216 |
| MseI | TTAA | 2 cut(s) | 60, 488 |
| Msp20I | TGGCCA | 1 cut(s) | 216 |
| MspA1I | CMGCKG | 1 cut(s) | 483 |
| MspI | CCGG | 1 cut(s) | 466 |
| MspR9I | CCNGG | 1 cut(s) | 467 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 471, 480 |
| NciI | CCSGG | 1 cut(s) | 467 |
| NdeII | GATC | 1 cut(s) | 388 |
| NlaIII | CATG | 2 cut(s) | 18, 188 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| NsiI | ATGCAT | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 1 cut(s) | 85 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 223, 385 |
| PkrI | GCNGC | 6 cut(s) | 119, 174, 240, 482, 485, 532 |
| PleI | GAGTC | 3 cut(s) | 340, 352, 361 |
| PpsI | GAGTC | 3 cut(s) | 340, 352, 361 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| SaqAI | TTAA | 2 cut(s) | 60, 488 |
| SatI | GCNGC | 6 cut(s) | 118, 173, 239, 481, 484, 531 |
| Sau3AI | GATC | 1 cut(s) | 388 |
| SchI | GAGTC | 3 cut(s) | 341, 353, 362 |
| ScrFI | CCNGG | 1 cut(s) | 467 |
| SduI | GDGCHC | 2 cut(s) | 289, 472 |
| SetI | ASST | 3 cut(s) | 119, 292, 377 |
| SfaNI | GCATC | 2 cut(s) | 43, 220 |
| SpeI | ACTAGT | 1 cut(s) | 110 |
| Sse9I | AATT | 1 cut(s) | 180 |
| SsiI | CCGC | 3 cut(s) | 120, 446, 481 |
| SspMI | CTAG | 1 cut(s) | 111 |
| StyD4I | CCNGG | 1 cut(s) | 465 |
| TaaI | ACNGT | 2 cut(s) | 416, 538 |
| TaiI | ACGT | 1 cut(s) | 377 |
| TasI | AATT | 1 cut(s) | 180 |
| TauI | GCSGC | 1 cut(s) | 483 |
| Tru1I | TTAA | 2 cut(s) | 60, 488 |
| Tru9I | TTAA | 2 cut(s) | 60, 488 |
| TscAI | CASTG | 2 cut(s) | 240, 543 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| TseI | GCWGC | 5 cut(s) | 117, 172, 238, 483, 530 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| TspDTI | ATGAA | 1 cut(s) | 173 |
| TspGWI | ACGGA | 1 cut(s) | 425 |
| TspRI | CASTG | 2 cut(s) | 240, 543 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 223, 385 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 85 |
| XspI | CTAG | 1 cut(s) | 111 |
| Zsp2I | ATGCAT | 1 cut(s) | 58 |