WRKY Transcription Factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1567 |
| Acc16I | TGCGCA | 1 cut(s) | 146 |
| Acc36I | ACCTGC | 1 cut(s) | 178 |
| AccBSI | CCGCTC | 1 cut(s) | 617 |
| AciI | CCGC | 5 cut(s) | 615, 865, 885, 1012, 1225 |
| AclI | AACGTT | 1 cut(s) | 1494 |
| AclWI | GGATC | 5 cut(s) | 495, 508, 723, 1086, 1349 |
| AcoI | YGGCCR | 1 cut(s) | 1367 |
| AcsI | RAATTY | 1 cut(s) | 924 |
| AcuI | CTGAAG | 2 cut(s) | 57, 1198 |
| AcvI | CACGTG | 1 cut(s) | 1320 |
| AfaI | GTAC | 5 cut(s) | 369, 516, 656, 1222, 1292 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 364, 531, 712, 1034, 1556 |
| AflIII | ACRYGT | 2 cut(s) | 200, 1317 |
| AgsI | TTSAA | 6 cut(s) | 130, 209, 484, 491, 764, 1134 |
| AhlI | ACTAGT | 1 cut(s) | 1505 |
| AjiI | CACGTC | 1 cut(s) | 203 |
| AjnI | CCWGG | 4 cut(s) | 414, 457, 1066, 1185 |
| AleI | CACNNNNGTG | 1 cut(s) | 417 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 707, 739, 1529, 1561 |
| Alw21I | GWGCWC | 1 cut(s) | 326 |
| Alw26I | GTCTC | 3 cut(s) | 220, 456, 1029 |
| AlwI | GGATC | 5 cut(s) | 495, 508, 723, 1086, 1349 |
| Ama87I | CYCGRG | 1 cut(s) | 1439 |
| AoxI | GGCC | 3 cut(s) | 801, 1064, 1367 |
| ApeKI | GCWGC | 2 cut(s) | 142, 1038 |
| ApoI | RAATTY | 1 cut(s) | 924 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1093, 1125 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 9 |
| AspLEI | GCGC | 1 cut(s) | 147 |
| AsuC2I | CCSGG | 1 cut(s) | 1550 |
| AsuHPI | GGTGA | 5 cut(s) | 404, 431, 917, 1061, 1563 |
| AvaI | CYCGRG | 1 cut(s) | 1439 |
| BamHI | GGATCC | 1 cut(s) | 500 |
| BbrPI | CACGTG | 1 cut(s) | 1320 |
| Bbv12I | GWGCWC | 1 cut(s) | 326 |
| BbvI | GCAGC | 2 cut(s) | 129, 1050 |
| BccI | CCATC | 4 cut(s) | 98, 259, 941, 1142 |
| BceAI | ACGGC | 2 cut(s) | 177, 1488 |
| BciT130I | CCWGG | 4 cut(s) | 416, 459, 1068, 1187 |
| BclI | TGATCA | 2 cut(s) | 1234, 1338 |
| BcnI | CCSGG | 1 cut(s) | 1550 |
| BcoDI | GTCTC | 3 cut(s) | 220, 456, 1029 |
| BcuI | ACTAGT | 1 cut(s) | 1505 |
| BfaI | CTAG | 2 cut(s) | 1410, 1506 |
| BfuAI | ACCTGC | 1 cut(s) | 178 |
| BisI | GCNGC | 2 cut(s) | 143, 1039 |
| BlsI | GCNGC | 2 cut(s) | 144, 1040 |
| Bme1390I | CCNGG | 5 cut(s) | 416, 459, 1068, 1187, 1550 |
| BmeT110I | CYCGRG | 1 cut(s) | 1439 |
| BmgBI | CACGTC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 3 cut(s) | 502, 1090, 1348 |
| BmrFI | CCNGG | 5 cut(s) | 416, 459, 1068, 1187, 1550 |
| BmrI | ACTGGG | 1 cut(s) | 1370 |
| BmsI | GCATC | 4 cut(s) | 262, 589, 611, 882 |
| BmuI | ACTGGG | 1 cut(s) | 1370 |
| BpmI | CTGGAG | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 1 cut(s) | 692 |
| BpuMI | CCSGG | 1 cut(s) | 1550 |
| BsaAI | YACGTR | 1 cut(s) | 1320 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1337 |
| BsaJI | CCNNGG | 5 cut(s) | 415, 457, 740, 1186, 1202 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1529, 1559 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 364, 531, 712, 1034, 1556 |
| Bse118I | RCCGGY | 1 cut(s) | 1046 |
| Bse1I | ACTGG | 2 cut(s) | 369, 1376 |
| Bse3DI | GCAATG | 1 cut(s) | 868 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1337 |
| BseBI | CCWGG | 4 cut(s) | 416, 459, 1068, 1187 |
| BseDI | CCNNGG | 5 cut(s) | 415, 457, 740, 1186, 1202 |
| BseGI | GGATG | 2 cut(s) | 109, 969 |
| BseJI | GATNNNNATC | 1 cut(s) | 1337 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 364, 531, 712, 1034, 1556 |
| BseMI | GCAATG | 1 cut(s) | 868 |
| BseMII | CTCAG | 3 cut(s) | 605, 738, 789 |
| BseNI | ACTGG | 2 cut(s) | 369, 1376 |
| BseRI | GAGGAG | 2 cut(s) | 932, 1034 |
| BseXI | GCAGC | 2 cut(s) | 129, 1050 |
| BshFI | GGCC | 3 cut(s) | 803, 1066, 1369 |
| BsiHKAI | GWGCWC | 1 cut(s) | 326 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1439 |
| BsiSI | CCGG | 3 cut(s) | 1047, 1535, 1550 |
| BslFI | GGGAC | 4 cut(s) | 865, 1405, 1480, 1573 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 364, 531, 712, 1034, 1556 |
| BsmAI | GTCTC | 3 cut(s) | 220, 456, 1029 |
| BsmFI | GGGAC | 4 cut(s) | 865, 1405, 1480, 1573 |
| BsnI | GGCC | 3 cut(s) | 803, 1066, 1369 |
| BsoBI | CYCGRG | 1 cut(s) | 1439 |
| Bsp1286I | GDGCHC | 1 cut(s) | 326 |
| Bsp1407I | TGTACA | 1 cut(s) | 514 |
| Bsp143I | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| Bsp19I | CCATGG | 1 cut(s) | 740 |
| BspACI | CCGC | 5 cut(s) | 615, 865, 885, 1012, 1225 |
| BspANI | GGCC | 3 cut(s) | 803, 1066, 1369 |
| BspCNI | CTCAG | 3 cut(s) | 604, 739, 790 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 3 cut(s) | 502, 1090, 1348 |
| BspMI | ACCTGC | 1 cut(s) | 178 |
| BspPI | GGATC | 5 cut(s) | 495, 508, 723, 1086, 1349 |
| BsrBI | CCGCTC | 1 cut(s) | 617 |
| BsrDI | GCAATG | 1 cut(s) | 868 |
| BsrFI | RCCGGY | 1 cut(s) | 1046 |
| BsrGI | TGTACA | 1 cut(s) | 514 |
| BsrI | ACTGG | 2 cut(s) | 369, 1376 |
| BssAI | RCCGGY | 1 cut(s) | 1046 |
| BssECI | CCNNGG | 5 cut(s) | 415, 457, 740, 1186, 1202 |
| BssMI | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| BssT1I | CCWWGG | 2 cut(s) | 740, 1202 |
| Bst2UI | CCWGG | 4 cut(s) | 416, 459, 1068, 1187 |
| Bst4CI | ACNGT | 8 cut(s) | 301, 514, 659, 789, 856, 1126, 1419, 1569 |
| Bst6I | CTCTTC | 3 cut(s) | 759, 1055, 1446 |
| BstAUI | TGTACA | 1 cut(s) | 514 |
| BstBAI | YACGTR | 1 cut(s) | 1320 |
| BstC8I | GCNNGC | 1 cut(s) | 220 |
| BstDEI | CTNAG | 4 cut(s) | 136, 591, 747, 798 |
| BstDSI | CCRYGG | 1 cut(s) | 740 |
| BstF5I | GGATG | 2 cut(s) | 109, 969 |
| BstHHI | GCGC | 1 cut(s) | 147 |
| BstKTI | GATC | 8 cut(s) | 503, 610, 718, 1081, 1237, 1341, 1357, 1405 |
| BstMAI | GTCTC | 3 cut(s) | 220, 456, 1029 |
| BstMBI | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 566 |
| BstNI | CCWGG | 4 cut(s) | 416, 459, 1068, 1187 |
| BstSCI | CCNGG | 5 cut(s) | 414, 457, 1066, 1185, 1548 |
| BstV1I | GCAGC | 2 cut(s) | 129, 1050 |
| BstX2I | RGATCY | 1 cut(s) | 500 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1119 |
| BstYI | RGATCY | 1 cut(s) | 500 |
| BsuRI | GGCC | 3 cut(s) | 803, 1066, 1369 |
| BtgI | CCRYGG | 1 cut(s) | 740 |
| BtrI | CACGTC | 1 cut(s) | 203 |
| BtsCI | GGATG | 2 cut(s) | 109, 969 |
| BtsIMutI | CAGTG | 3 cut(s) | 795, 1131, 1415 |
| BveI | ACCTGC | 1 cut(s) | 178 |
| Cac8I | GCNNGC | 1 cut(s) | 220 |
| CciI | TCATGA | 1 cut(s) | 277 |
| CfoI | GCGC | 1 cut(s) | 147 |
| Cfr10I | RCCGGY | 1 cut(s) | 1046 |
| Csp6I | GTAC | 5 cut(s) | 368, 515, 655, 1221, 1291 |
| CviQI | GTAC | 5 cut(s) | 368, 515, 655, 1221, 1291 |
| DdeI | CTNAG | 4 cut(s) | 136, 591, 747, 798 |
| DpnI | GATC | 8 cut(s) | 502, 609, 717, 1080, 1236, 1340, 1356, 1404 |
| DpnII | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1567 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1567 |
| EaeI | YGGCCR | 1 cut(s) | 1367 |
| Eam1104I | CTCTTC | 3 cut(s) | 759, 1055, 1446 |
| EarI | CTCTTC | 3 cut(s) | 759, 1055, 1446 |
| Eco130I | CCWWGG | 2 cut(s) | 740, 1202 |
| Eco57I | CTGAAG | 2 cut(s) | 57, 1198 |
| Eco72I | CACGTG | 1 cut(s) | 1320 |
| Eco88I | CYCGRG | 1 cut(s) | 1439 |
| EcoRII | CCWGG | 4 cut(s) | 414, 457, 1066, 1185 |
| EcoT14I | CCWWGG | 2 cut(s) | 740, 1202 |
| EcoT22I | ATGCAT | 1 cut(s) | 604 |
| ErhI | CCWWGG | 2 cut(s) | 740, 1202 |
| FaqI | GGGAC | 4 cut(s) | 865, 1405, 1480, 1573 |
| FauI | CCCGC | 1 cut(s) | 1232 |
| FauNDI | CATATG | 3 cut(s) | 15, 720, 733 |
| FbaI | TGATCA | 2 cut(s) | 1234, 1338 |
| Fnu4HI | GCNGC | 2 cut(s) | 143, 1039 |
| FokI | GGATG | 2 cut(s) | 116, 956 |
| Fsp4HI | GCNGC | 2 cut(s) | 143, 1039 |
| FspBI | CTAG | 2 cut(s) | 1410, 1506 |
| FspI | TGCGCA | 1 cut(s) | 146 |
| GlaI | GCGC | 1 cut(s) | 146 |
| GluI | GCNGC | 2 cut(s) | 143, 1039 |
| GsuI | CTGGAG | 1 cut(s) | 1011 |
| HaeIII | GGCC | 3 cut(s) | 803, 1066, 1369 |
| HapII | CCGG | 3 cut(s) | 1047, 1535, 1550 |
| HhaI | GCGC | 1 cut(s) | 147 |
| Hin6I | GCGC | 1 cut(s) | 145 |
| HinP1I | GCGC | 1 cut(s) | 145 |
| HincII | GTYRAC | 1 cut(s) | 1498 |
| HindII | GTYRAC | 1 cut(s) | 1498 |
| HindIII | AAGCTT | 1 cut(s) | 216 |
| HpaI | GTTAAC | 1 cut(s) | 1498 |
| HpaII | CCGG | 3 cut(s) | 1047, 1535, 1550 |
| HphI | GGTGA | 5 cut(s) | 404, 431, 917, 1061, 1563 |
| Hpy166II | GTNNAC | 3 cut(s) | 1327, 1498, 1518 |
| Hpy188I | TCNGA | 9 cut(s) | 103, 594, 607, 715, 748, 1075, 1083, 1217, 1354 |
| Hpy188III | TCNNGA | 7 cut(s) | 206, 278, 473, 850, 1028, 1112, 1439 |
| Hpy8I | GTNNAC | 3 cut(s) | 1327, 1498, 1518 |
| Hpy99I | CGWCG | 1 cut(s) | 1474 |
| HpyAV | CCTTC | 3 cut(s) | 1028, 1078, 1171 |
| HpyCH4III | ACNGT | 8 cut(s) | 301, 514, 659, 789, 856, 1126, 1419, 1569 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 1319, 1494 |
| HpyCH4V | TGCA | 8 cut(s) | 173, 222, 285, 305, 602, 873, 1383, 1458 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 566 |
| HpyF3I | CTNAG | 4 cut(s) | 136, 591, 747, 798 |
| HpySE526I | ACGT | 3 cut(s) | 202, 1319, 1494 |
| HspAI | GCGC | 1 cut(s) | 145 |
| Ksp22I | TGATCA | 2 cut(s) | 1234, 1338 |
| KspAI | GTTAAC | 1 cut(s) | 1498 |
| Kzo9I | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| LmnI | GCTCC | 2 cut(s) | 919, 1346 |
| Lsp1109I | GCAGC | 2 cut(s) | 129, 1050 |
| LweI | GCATC | 4 cut(s) | 262, 589, 611, 882 |
| MaeI | CTAG | 2 cut(s) | 1410, 1506 |
| MaeII | ACGT | 3 cut(s) | 202, 1319, 1494 |
| MaeIII | GTNAC | 2 cut(s) | 965, 1569 |
| MalI | GATC | 8 cut(s) | 502, 609, 717, 1080, 1236, 1340, 1356, 1404 |
| MbiI | CCGCTC | 1 cut(s) | 617 |
| MboI | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| MboII | GAAGA | 6 cut(s) | 17, 776, 1072, 1113, 1456, 1463 |
| MflI | RGATCY | 1 cut(s) | 500 |
| MhlI | GDGCHC | 1 cut(s) | 326 |
| MluCI | AATT | 9 cut(s) | 70, 95, 209, 262, 352, 484, 529, 924, 1296 |
| MlyI | GAGTC | 5 cut(s) | 1031, 1117, 1124, 1269, 1538 |
| MmeI | TCCRAC | 5 cut(s) | 385, 693, 996, 1116, 1288 |
| Mph1103I | ATGCAT | 1 cut(s) | 604 |
| MroXI | GAANNNNTTC | 1 cut(s) | 9 |
| MseI | TTAA | 3 cut(s) | 444, 635, 1497 |
| MslI | CAYNNNNRTG | 2 cut(s) | 417, 1334 |
| MspA1I | CMGCKG | 1 cut(s) | 963 |
| MspI | CCGG | 3 cut(s) | 1047, 1535, 1550 |
| MspR9I | CCNGG | 5 cut(s) | 416, 459, 1068, 1187, 1550 |
| MvaI | CCWGG | 4 cut(s) | 416, 459, 1068, 1187 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 566 |
| NciI | CCSGG | 1 cut(s) | 1550 |
| NcoI | CCATGG | 1 cut(s) | 740 |
| NdeI | CATATG | 3 cut(s) | 15, 720, 733 |
| NdeII | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| NlaIV | GGNNCC | 3 cut(s) | 502, 1090, 1348 |
| NmuCI | GTSAC | 2 cut(s) | 965, 1569 |
| NsbI | TGCGCA | 1 cut(s) | 146 |
| NsiI | ATGCAT | 1 cut(s) | 604 |
| OliI | CACNNNNGTG | 1 cut(s) | 417 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 9 |
| PfeI | GAWTC | 7 cut(s) | 62, 181, 331, 376, 469, 702, 1426 |
| PfoI | TCCNGGA | 1 cut(s) | 1548 |
| PkrI | GCNGC | 2 cut(s) | 144, 1040 |
| PleI | GAGTC | 5 cut(s) | 1030, 1116, 1123, 1268, 1537 |
| PmaCI | CACGTG | 1 cut(s) | 1320 |
| PmlI | CACGTG | 1 cut(s) | 1320 |
| PpsI | GAGTC | 5 cut(s) | 1030, 1116, 1123, 1268, 1537 |
| Ppu21I | YACGTR | 1 cut(s) | 1320 |
| Psp1406I | AACGTT | 1 cut(s) | 1494 |
| Psp6I | CCWGG | 4 cut(s) | 414, 457, 1066, 1185 |
| PspCI | CACGTG | 1 cut(s) | 1320 |
| PspGI | CCWGG | 4 cut(s) | 414, 457, 1066, 1185 |
| PspN4I | GGNNCC | 3 cut(s) | 502, 1090, 1348 |
| PsuI | RGATCY | 1 cut(s) | 500 |
| PvuII | CAGCTG | 1 cut(s) | 963 |
| RsaI | GTAC | 5 cut(s) | 369, 516, 656, 1222, 1292 |
| RsaNI | GTAC | 5 cut(s) | 368, 515, 655, 1221, 1291 |
| RseI | CAYNNNNRTG | 2 cut(s) | 417, 1334 |
| SaqAI | TTAA | 3 cut(s) | 444, 635, 1497 |
| SatI | GCNGC | 2 cut(s) | 143, 1039 |
| Sau3AI | GATC | 8 cut(s) | 500, 607, 715, 1078, 1234, 1338, 1354, 1402 |
| SchI | GAGTC | 5 cut(s) | 1031, 1117, 1124, 1269, 1538 |
| ScrFI | CCNGG | 5 cut(s) | 416, 459, 1068, 1187, 1550 |
| SduI | GDGCHC | 1 cut(s) | 326 |
| SfaNI | GCATC | 4 cut(s) | 262, 589, 611, 882 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 417, 1334 |
| SmlI | CTYRAG | 1 cut(s) | 707 |
| SmoI | CTYRAG | 1 cut(s) | 707 |
| SpeI | ACTAGT | 1 cut(s) | 1505 |
| Sse9I | AATT | 9 cut(s) | 70, 95, 209, 262, 352, 484, 529, 924, 1296 |
| SsiI | CCGC | 5 cut(s) | 615, 865, 885, 1012, 1225 |
| SspMI | CTAG | 2 cut(s) | 1410, 1506 |
| StyD4I | CCNGG | 5 cut(s) | 414, 457, 1066, 1185, 1548 |
| StyI | CCWWGG | 2 cut(s) | 740, 1202 |
| TaaI | ACNGT | 8 cut(s) | 301, 514, 659, 789, 856, 1126, 1419, 1569 |
| TaiI | ACGT | 3 cut(s) | 205, 1322, 1497 |
| TaqI | TCGA | 1 cut(s) | 427 |
| TasI | AATT | 9 cut(s) | 70, 95, 209, 262, 352, 484, 529, 924, 1296 |
| TatI | WGTACW | 2 cut(s) | 514, 654 |
| TfiI | GAWTC | 7 cut(s) | 62, 181, 331, 376, 469, 702, 1426 |
| Tru1I | TTAA | 3 cut(s) | 444, 635, 1497 |
| Tru9I | TTAA | 3 cut(s) | 444, 635, 1497 |
| TscAI | CASTG | 3 cut(s) | 802, 1131, 1422 |
| TseFI | GTSAC | 2 cut(s) | 965, 1569 |
| TseI | GCWGC | 2 cut(s) | 142, 1038 |
| Tsp45I | GTSAC | 2 cut(s) | 965, 1569 |
| TspDTI | ATGAA | 7 cut(s) | 194, 331, 344, 715, 748, 798, 890 |
| TspGWI | ACGGA | 1 cut(s) | 653 |
| TspRI | CASTG | 3 cut(s) | 802, 1131, 1422 |
| XapI | RAATTY | 1 cut(s) | 924 |
| XmnI | GAANNNNTTC | 1 cut(s) | 9 |
| XspI | CTAG | 2 cut(s) | 1410, 1506 |
| Zsp2I | ATGCAT | 1 cut(s) | 604 |