Leucine-rich repeats, outliers
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 50 |
| AciI | CCGC | 1 cut(s) | 40 |
| AclWI | GGATC | 2 cut(s) | 254, 532 |
| AcsI | RAATTY | 2 cut(s) | 319, 363 |
| AfaI | GTAC | 2 cut(s) | 277, 286 |
| AflII | CTTAAG | 1 cut(s) | 497 |
| AgsI | TTSAA | 4 cut(s) | 140, 325, 420, 458 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 303 |
| AjnI | CCWGG | 2 cut(s) | 61, 278 |
| AluBI | AGCT | 3 cut(s) | 217, 291, 486 |
| AluI | AGCT | 3 cut(s) | 217, 291, 486 |
| Alw26I | GTCTC | 2 cut(s) | 290, 561 |
| AlwI | GGATC | 2 cut(s) | 254, 532 |
| AoxI | GGCC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 2 cut(s) | 486, 513 |
| ApoI | RAATTY | 2 cut(s) | 319, 363 |
| AspS9I | GGNCC | 1 cut(s) | 433 |
| AsuC2I | CCSGG | 1 cut(s) | 264 |
| AvaII | GGWCC | 1 cut(s) | 433 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 259, 259, 292, 292 |
| BbsI | GAAGAC | 1 cut(s) | 299 |
| BbvI | GCAGC | 2 cut(s) | 473, 525 |
| BccI | CCATC | 2 cut(s) | 338, 448 |
| BciT130I | CCWGG | 2 cut(s) | 63, 280 |
| BciVI | GTATCC | 1 cut(s) | 260 |
| BclI | TGATCA | 1 cut(s) | 100 |
| BcnI | CCSGG | 1 cut(s) | 264 |
| BcoDI | GTCTC | 2 cut(s) | 290, 561 |
| BfaI | CTAG | 3 cut(s) | 473, 479, 552 |
| BfrI | CTTAAG | 1 cut(s) | 497 |
| BfuI | GTATCC | 1 cut(s) | 260 |
| BglII | AGATCT | 1 cut(s) | 475 |
| BisI | GCNGC | 2 cut(s) | 487, 514 |
| BlsI | GCNGC | 2 cut(s) | 488, 515 |
| Bme1390I | CCNGG | 3 cut(s) | 63, 264, 280 |
| Bme18I | GGWCC | 1 cut(s) | 433 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 303 |
| BmgT120I | GGNCC | 1 cut(s) | 433 |
| BmiI | GGNNCC | 1 cut(s) | 435 |
| BmrFI | CCNGG | 3 cut(s) | 63, 264, 280 |
| BmsI | GCATC | 3 cut(s) | 121, 535, 553 |
| BpiI | GAAGAC | 1 cut(s) | 299 |
| Bpu10I | CCTNAGC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 2 cut(s) | 413, 449 |
| BpuMI | CCSGG | 1 cut(s) | 264 |
| BsaAI | YACGTR | 1 cut(s) | 106 |
| BsaBI | GATNNNNATC | 1 cut(s) | 99 |
| BsaI | GGTCTC | 1 cut(s) | 561 |
| BsaJI | CCNNGG | 2 cut(s) | 62, 279 |
| Bse8I | GATNNNNATC | 1 cut(s) | 99 |
| BseBI | CCWGG | 2 cut(s) | 63, 280 |
| BseDI | CCNNGG | 2 cut(s) | 62, 279 |
| BseGI | GGATG | 2 cut(s) | 136, 440 |
| BseJI | GATNNNNATC | 1 cut(s) | 99 |
| BseMII | CTCAG | 2 cut(s) | 183, 369 |
| BseXI | GCAGC | 2 cut(s) | 473, 525 |
| BshFI | GGCC | 1 cut(s) | 197 |
| BsiSI | CCGG | 1 cut(s) | 264 |
| BslFI | GGGAC | 1 cut(s) | 419 |
| BsmAI | GTCTC | 2 cut(s) | 290, 561 |
| BsmFI | GGGAC | 1 cut(s) | 419 |
| BsmI | GAATGC | 2 cut(s) | 146, 516 |
| BsnI | GGCC | 1 cut(s) | 197 |
| Bso31I | GGTCTC | 1 cut(s) | 561 |
| Bsp143I | GATC | 4 cut(s) | 100, 259, 475, 537 |
| BspACI | CCGC | 1 cut(s) | 40 |
| BspANI | GGCC | 1 cut(s) | 197 |
| BspCNI | CTCAG | 2 cut(s) | 184, 370 |
| BspLI | GGNNCC | 1 cut(s) | 435 |
| BspPI | GGATC | 2 cut(s) | 254, 532 |
| BspQI | GCTCTTC | 1 cut(s) | 459 |
| BspTI | CTTAAG | 1 cut(s) | 497 |
| BspTNI | GGTCTC | 1 cut(s) | 561 |
| BssECI | CCNNGG | 2 cut(s) | 62, 279 |
| BssMI | GATC | 4 cut(s) | 100, 259, 475, 537 |
| Bst2UI | CCWGG | 2 cut(s) | 63, 280 |
| Bst4CI | ACNGT | 3 cut(s) | 74, 272, 347 |
| Bst6I | CTCTTC | 1 cut(s) | 459 |
| BstAFI | CTTAAG | 1 cut(s) | 497 |
| BstBAI | YACGTR | 1 cut(s) | 106 |
| BstDEI | CTNAG | 4 cut(s) | 43, 192, 218, 378 |
| BstF5I | GGATG | 2 cut(s) | 136, 440 |
| BstKTI | GATC | 4 cut(s) | 103, 262, 478, 540 |
| BstMAI | GTCTC | 2 cut(s) | 290, 561 |
| BstMBI | GATC | 4 cut(s) | 100, 259, 475, 537 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 131 |
| BstNI | CCWGG | 2 cut(s) | 63, 280 |
| BstSCI | CCNGG | 3 cut(s) | 61, 262, 278 |
| BstV1I | GCAGC | 2 cut(s) | 473, 525 |
| BstV2I | GAAGAC | 1 cut(s) | 299 |
| BstX2I | RGATCY | 2 cut(s) | 475, 537 |
| BstYI | RGATCY | 2 cut(s) | 475, 537 |
| BsuI | GTATCC | 1 cut(s) | 260 |
| BsuRI | GGCC | 1 cut(s) | 197 |
| BtsCI | GGATG | 2 cut(s) | 136, 440 |
| BtsIMutI | CAGTG | 1 cut(s) | 571 |
| Cfr13I | GGNCC | 1 cut(s) | 433 |
| Csp6I | GTAC | 2 cut(s) | 276, 285 |
| CviAII | CATG | 1 cut(s) | 5 |
| CviJI | RGCY | 7 cut(s) | 125, 197, 217, 223, 291, 329, 486 |
| CviKI_1 | RGCY | 7 cut(s) | 125, 197, 217, 223, 291, 329, 486 |
| CviQI | GTAC | 2 cut(s) | 276, 285 |
| DdeI | CTNAG | 4 cut(s) | 43, 192, 218, 378 |
| DpnI | GATC | 4 cut(s) | 102, 261, 477, 539 |
| DpnII | GATC | 4 cut(s) | 100, 259, 475, 537 |
| DriI | GACNNNNNGTC | 1 cut(s) | 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 459 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 1 cut(s) | 459 |
| Eco147I | AGGCCT | 1 cut(s) | 197 |
| Eco31I | GGTCTC | 1 cut(s) | 561 |
| Eco47I | GGWCC | 1 cut(s) | 433 |
| EcoO109I | RGGNCCY | 1 cut(s) | 433 |
| EcoRII | CCWGG | 2 cut(s) | 61, 278 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 185 |
| FaeI | CATG | 1 cut(s) | 8 |
| FaqI | GGGAC | 1 cut(s) | 419 |
| FatI | CATG | 1 cut(s) | 4 |
| FauNDI | CATATG | 2 cut(s) | 21, 522 |
| FbaI | TGATCA | 1 cut(s) | 100 |
| FblI | GTMKAC | 1 cut(s) | 50 |
| Fnu4HI | GCNGC | 2 cut(s) | 487, 514 |
| FokI | GGATG | 2 cut(s) | 143, 427 |
| Fsp4HI | GCNGC | 2 cut(s) | 487, 514 |
| FspBI | CTAG | 3 cut(s) | 473, 479, 552 |
| GluI | GCNGC | 2 cut(s) | 487, 514 |
| HaeIII | GGCC | 1 cut(s) | 197 |
| HapII | CCGG | 1 cut(s) | 264 |
| Hin1II | CATG | 1 cut(s) | 8 |
| HincII | GTYRAC | 2 cut(s) | 175, 469 |
| HindII | GTYRAC | 2 cut(s) | 175, 469 |
| HinfI | GANTC | 3 cut(s) | 47, 112, 502 |
| HpaI | GTTAAC | 1 cut(s) | 469 |
| HpaII | CCGG | 1 cut(s) | 264 |
| Hpy166II | GTNNAC | 3 cut(s) | 51, 175, 469 |
| Hpy188III | TCNNGA | 5 cut(s) | 368, 392, 420, 479, 560 |
| Hpy8I | GTNNAC | 3 cut(s) | 51, 175, 469 |
| HpyCH4III | ACNGT | 3 cut(s) | 74, 272, 347 |
| HpyCH4IV | ACGT | 2 cut(s) | 105, 403 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 134, 183, 316, 566 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 131 |
| HpyF3I | CTNAG | 4 cut(s) | 43, 192, 218, 378 |
| HpySE526I | ACGT | 2 cut(s) | 105, 403 |
| Hsp92II | CATG | 1 cut(s) | 8 |
| Ksp22I | TGATCA | 1 cut(s) | 100 |
| KspAI | GTTAAC | 1 cut(s) | 469 |
| Kzo9I | GATC | 4 cut(s) | 100, 259, 475, 537 |
| LguI | GCTCTTC | 1 cut(s) | 459 |
| LpnPI | CCDG | 7 cut(s) | 48, 75, 265, 277, 292, 326, 381 |
| Lsp1109I | GCAGC | 2 cut(s) | 473, 525 |
| LweI | GCATC | 3 cut(s) | 121, 535, 553 |
| MaeI | CTAG | 3 cut(s) | 473, 479, 552 |
| MaeII | ACGT | 2 cut(s) | 105, 403 |
| MaeIII | GTNAC | 1 cut(s) | 341 |
| MalI | GATC | 4 cut(s) | 102, 261, 477, 539 |
| MboI | GATC | 4 cut(s) | 100, 259, 475, 537 |
| MboII | GAAGA | 3 cut(s) | 104, 299, 446 |
| MfeI | CAATTG | 1 cut(s) | 135 |
| MflI | RGATCY | 2 cut(s) | 475, 537 |
| MluCI | AATT | 3 cut(s) | 135, 319, 363 |
| MlyI | GAGTC | 2 cut(s) | 56, 106 |
| MnlI | CCTC | 5 cut(s) | 187, 373, 388, 424, 447 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 185 |
| MseI | TTAA | 6 cut(s) | 11, 146, 338, 408, 468, 498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| MspCI | CTTAAG | 1 cut(s) | 497 |
| MspI | CCGG | 1 cut(s) | 264 |
| MspR9I | CCNGG | 3 cut(s) | 63, 264, 280 |
| MunI | CAATTG | 1 cut(s) | 135 |
| Mva1269I | GAATGC | 2 cut(s) | 146, 516 |
| MvaI | CCWGG | 2 cut(s) | 63, 280 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 131 |
| NciI | CCSGG | 1 cut(s) | 264 |
| NdeI | CATATG | 2 cut(s) | 21, 522 |
| NdeII | GATC | 4 cut(s) | 100, 259, 475, 537 |
| NlaIII | CATG | 1 cut(s) | 8 |
| NlaIV | GGNNCC | 1 cut(s) | 435 |
| NsiI | ATGCAT | 2 cut(s) | 6, 185 |
| PceI | AGGCCT | 1 cut(s) | 197 |
| PciSI | GCTCTTC | 1 cut(s) | 459 |
| PctI | GAATGC | 2 cut(s) | 146, 516 |
| PfeI | GAWTC | 1 cut(s) | 502 |
| PfoI | TCCNGGA | 1 cut(s) | 262 |
| PkrI | GCNGC | 2 cut(s) | 488, 515 |
| PleI | GAGTC | 2 cut(s) | 55, 106 |
| PpsI | GAGTC | 2 cut(s) | 55, 106 |
| Ppu21I | YACGTR | 1 cut(s) | 106 |
| PpuMI | RGGWCCY | 1 cut(s) | 433 |
| Psp5II | RGGWCCY | 1 cut(s) | 433 |
| Psp6I | CCWGG | 2 cut(s) | 61, 278 |
| PspGI | CCWGG | 2 cut(s) | 61, 278 |
| PspN4I | GGNNCC | 1 cut(s) | 435 |
| PspPI | GGNCC | 1 cut(s) | 433 |
| PspPPI | RGGWCCY | 1 cut(s) | 433 |
| PsuI | RGATCY | 2 cut(s) | 475, 537 |
| RsaI | GTAC | 2 cut(s) | 277, 286 |
| RsaNI | GTAC | 2 cut(s) | 276, 285 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SapI | GCTCTTC | 1 cut(s) | 459 |
| SaqAI | TTAA | 6 cut(s) | 11, 146, 338, 408, 468, 498 |
| SatI | GCNGC | 2 cut(s) | 487, 514 |
| Sau3AI | GATC | 4 cut(s) | 100, 259, 475, 537 |
| Sau96I | GGNCC | 1 cut(s) | 433 |
| SchI | GAGTC | 2 cut(s) | 56, 106 |
| ScrFI | CCNGG | 3 cut(s) | 63, 264, 280 |
| SfaNI | GCATC | 3 cut(s) | 121, 535, 553 |
| SinI | GGWCC | 1 cut(s) | 433 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SmlI | CTYRAG | 3 cut(s) | 392, 428, 497 |
| SmoI | CTYRAG | 3 cut(s) | 392, 428, 497 |
| Sse9I | AATT | 3 cut(s) | 135, 319, 363 |
| SseBI | AGGCCT | 1 cut(s) | 197 |
| SsiI | CCGC | 1 cut(s) | 40 |
| SspMI | CTAG | 3 cut(s) | 473, 479, 552 |
| StuI | AGGCCT | 1 cut(s) | 197 |
| StyD4I | CCNGG | 3 cut(s) | 61, 262, 278 |
| TaaI | ACNGT | 3 cut(s) | 74, 272, 347 |
| TaiI | ACGT | 2 cut(s) | 108, 406 |
| TaqI | TCGA | 1 cut(s) | 161 |
| TasI | AATT | 3 cut(s) | 135, 319, 363 |
| TfiI | GAWTC | 1 cut(s) | 502 |
| Tru1I | TTAA | 6 cut(s) | 11, 146, 338, 408, 468, 498 |
| Tru9I | TTAA | 6 cut(s) | 11, 146, 338, 408, 468, 498 |
| TseI | GCWGC | 2 cut(s) | 486, 513 |
| TspDTI | ATGAA | 4 cut(s) | 105, 231, 509, 539 |
| TspGWI | ACGGA | 1 cut(s) | 143 |
| Vha464I | CTTAAG | 1 cut(s) | 497 |
| VpaK11BI | GGWCC | 1 cut(s) | 433 |
| XapI | RAATTY | 2 cut(s) | 319, 363 |
| XbaI | TCTAGA | 1 cut(s) | 478 |
| XmiI | GTMKAC | 1 cut(s) | 50 |
| XspI | CTAG | 3 cut(s) | 473, 479, 552 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 185 |