MD11G1161600.v1.1
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0018485
Physical Location & Seq
Reverse (-)
15973070 .. 15973423
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1161600.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGCGGCGAAGTTCCCGATGGAATTGCAAAGCTTCCGTCTTTGGAGACGCTGCTTTTGTGGAACAATTTATTCTCCGGCAACCTTCCCCGGAGCTTGGGGAGGAACTCGAAGCTCGGATGGGTGGACGTTTCCACAAACAACTTCAACGGCAGCGTTCCGCCGGATATCTGTGCGAATGGTCAGCTCCTTAAGCTGATGCTGTTTTCGAACAATTTCTCAGGCAATCTCTCCACTTCTCTATCAAACTGTTTGTCTCTGGTTCGTCTTCGACTCGAAGATAACAAGTTTTCAGGTGAGATTCCATTGAAATTTAGCACTCTTACATGCGTGAAATTTGAACCTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.86

Weight (kDa)

7.69

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018485)

Species Orthologous Gene IDs
malus_domestica MD07G1129100.v1.1 MD11G1161600.v1.1 MD11G1249100.v1.1 MD13G1188300.v1.1
prunus_persica Prupe.6G154500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459261
rosa_laevigata RLG00000006584
rosa_multiflora Rmu_sc0002093.1_g000018
rosa_samantha Rh4AG341800 Rh4DG344300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 161
AcsI RAATTY 2 cut(s) 311, 335
AfiI CCNNNNNNNGG 1 cut(s) 97
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 148, 310, 341
AluBI AGCT 5 cut(s) 34, 96, 115, 187, 196
AluI AGCT 5 cut(s) 34, 96, 115, 187, 196
Alw26I GTCTC 2 cut(s) 41, 261
ApeKI GCWGC 2 cut(s) 52, 153
ApoI RAATTY 2 cut(s) 311, 335
ArsI GACNNNNNNTTYG 6 cut(s) 23, 40, 55, 72, 239, 271
Asp700I GAANNNNTTC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 308
AsuII TTCGAA 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 39, 165
BccI CCATC 2 cut(s) 14, 114
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 41, 261
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 3 cut(s) 7, 53, 154
BlsI GCNGC 3 cut(s) 8, 54, 155
Bme1390I CCNGG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 234
BseXI GCAGC 2 cut(s) 39, 165
BsiSI CCGG 3 cut(s) 78, 91, 164
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 41, 261
BsmBI CGTCTC 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 209
BspACI CCGC 2 cut(s) 6, 161
BspCNI CTCAG 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 125
BstMAI GTCTC 2 cut(s) 41, 261
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 39, 165
BstV2I GAAGAC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 125
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 327
CviJI RGCY 5 cut(s) 34, 96, 115, 187, 196
CviKI_1 RGCY 5 cut(s) 34, 96, 115, 187, 196
DdeI CTNAG 1 cut(s) 220
EciI GGCGGA 1 cut(s) 150
Eco32I GATATC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 169
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 1 cut(s) 330
FaiI YATR 3 cut(s) 328, 348, 350
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 7, 53, 154
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 7, 53, 154
GluI GCNGC 3 cut(s) 7, 53, 154
HapII CCGG 3 cut(s) 78, 91, 164
HgaI GACGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 2 cut(s) 273, 301
HpaII CCGG 3 cut(s) 78, 91, 164
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 330
LmnI GCTCC 2 cut(s) 93, 192
LpnPI CCDG 6 cut(s) 91, 104, 177, 207, 245, 279
Lsp1109I GCAGC 2 cut(s) 39, 165
LweI GCATC 1 cut(s) 189
MaeII ACGT 1 cut(s) 129
MbiI CCGCTC 1 cut(s) 6
MboII GAAGA 2 cut(s) 260, 290
MluCI AATT 5 cut(s) 24, 67, 214, 311, 335
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 3 cut(s) 78, 91, 164
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 91
NlaIII CATG 1 cut(s) 330
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 8, 54, 155
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 7, 53, 154
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 91
SetI ASST 9 cut(s) 36, 87, 98, 117, 132, 189, 198, 298, 346
SfaNI GCATC 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 5 cut(s) 24, 67, 214, 311, 335
SsiI CCGC 2 cut(s) 6, 161
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 110, 209, 271, 276
TasI AATT 5 cut(s) 24, 67, 214, 311, 335
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 52, 153
TspGWI ACGGA 1 cut(s) 27
Vha464I CTTAAG 1 cut(s) 191
XapI RAATTY 2 cut(s) 311, 335
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.