MD11G1249100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0018485
Physical Location & Seq
Reverse (-)
36090873 .. 36091226
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1249100.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAGCGGCGAAGTTCCCGACGGAATTGCAGAGCTTCCGTCTTTGAAGACGCTGCTTTTGTGGAACAATTTATTCTCCGGCAACCTTCCCCGGAGCTTGGGGAGGAACGCGAAGCTTAGATGGGTGGACGTCTCCATAAACAACTTCAACGGCAGCGTTCCGCCGGATATCTGTGCGAATGGTCAGCTCCTTAAGCTAATGCTGTTTTCGAACAATTTCTCCGGCGATCTCTCCACTTCTCTGTCAAACTGTTCGTCTCTGGTTCGTCTTCGACTCGAAGATAACAAGTTTTCAAGTGAGATTCCATTGAAATTCAGCACTCTTACATGCGTGAAATTTGAACCTTATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

7.69

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018485)

Species Orthologous Gene IDs
malus_domestica MD07G1129100.v1.1 MD11G1161600.v1.1 MD11G1249100.v1.1 MD13G1188300.v1.1
prunus_persica Prupe.6G154500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0459261
rosa_laevigata RLG00000006584
rosa_multiflora Rmu_sc0002093.1_g000018
rosa_samantha Rh4AG341800 Rh4DG344300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 6, 161
AcsI RAATTY 2 cut(s) 311, 335
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 97
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 5 cut(s) 46, 148, 294, 310, 341
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 5 cut(s) 34, 96, 115, 187, 196
AluI AGCT 5 cut(s) 34, 96, 115, 187, 196
Alw26I GTCTC 2 cut(s) 136, 261
ApeKI GCWGC 2 cut(s) 52, 153
ApoI RAATTY 2 cut(s) 311, 335
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 239, 271
Asp700I GAANNNNTTC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 53, 260
BbvI GCAGC 2 cut(s) 39, 165
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 136, 261
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 3 cut(s) 7, 53, 154
BlsI GCNGC 3 cut(s) 8, 54, 155
Bme1390I CCNGG 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 91
BpiI GAAGAC 2 cut(s) 53, 260
Bpu14I TTCGAA 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 39, 165
Bsh1236I CGCG 1 cut(s) 110
BsiSI CCGG 4 cut(s) 78, 91, 164, 222
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 2 cut(s) 136, 261
BsmBI CGTCTC 2 cut(s) 136, 261
Bsp119I TTCGAA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 2 cut(s) 6, 161
BspFNI CGCG 1 cut(s) 110
BspT104I TTCGAA 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 136, 261
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 39, 165
BstV2I GAAGAC 2 cut(s) 53, 260
CseI GACGC 1 cut(s) 58
CviAII CATG 1 cut(s) 327
CviJI RGCY 5 cut(s) 34, 96, 115, 187, 196
CviKI_1 RGCY 5 cut(s) 34, 96, 115, 187, 196
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 150
Eco32I GATATC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 169
Esp3I CGTCTC 2 cut(s) 136, 261
FaeI CATG 1 cut(s) 330
FaiI YATR 4 cut(s) 137, 328, 348, 350
FatI CATG 1 cut(s) 326
Fnu4HI GCNGC 3 cut(s) 7, 53, 154
Fsp4HI GCNGC 3 cut(s) 7, 53, 154
GluI GCNGC 3 cut(s) 7, 53, 154
HapII CCGG 4 cut(s) 78, 91, 164, 222
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 2 cut(s) 273, 301
HpaII CCGG 4 cut(s) 78, 91, 164, 222
Hpy166II GTNNAC 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 330
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 93, 192
LpnPI CCDG 5 cut(s) 91, 104, 177, 235, 245
Lsp1109I GCAGC 2 cut(s) 39, 165
MaeII ACGT 1 cut(s) 129
MalI GATC 1 cut(s) 228
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 226
MboII GAAGA 3 cut(s) 58, 260, 290
MluCI AATT 5 cut(s) 24, 67, 214, 311, 335
MlyI GAGTC 1 cut(s) 267
MnlI CCTC 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 4 cut(s) 78, 91, 164, 222
MspR9I CCNGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 330
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 3 cut(s) 8, 54, 155
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 7, 53, 154
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 1 cut(s) 91
SetI ASST 8 cut(s) 36, 87, 98, 117, 132, 189, 198, 346
SfuI TTCGAA 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 5 cut(s) 24, 67, 214, 311, 335
SsiI CCGC 2 cut(s) 6, 161
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 132
TaqI TCGA 3 cut(s) 209, 271, 276
TasI AATT 5 cut(s) 24, 67, 214, 311, 335
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 2 cut(s) 52, 153
TspGWI ACGGA 2 cut(s) 27, 36
Vha464I CTTAAG 1 cut(s) 191
XapI RAATTY 2 cut(s) 311, 335
XceI RCATGY 1 cut(s) 330
XmnI GAANNNNTTC 1 cut(s) 215
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.