Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002093.1

Orthogroup ID

OG0018485

Physical Location & Seq

Genomic Coordinates Forward (+)

74798 .. 75728

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002093.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggactcgcggggctgggcaggctgtgcgcaggcagggtgcaggccgtgtgtagcatggcagaccgagctccaggttttgcaactatgggagaacaacttcactgggtctattcctcaaggtatggacataaagggaaaacttgaaatcctcgacttgtctttgaacaaattgacaggagctcttcctcttgattcgaatgggtcttttgtcgtcaaaagtattccatcgaaaaggactagaattgtaggaggatttgaaagatttccaggagtaagggaagataatcatgggtcgtttgtttatattgggctcattgatttcacgatagagattaatagtgatatgagtaaagaaaaaaacatggcattttctgggctgagactggttcaaaacttcaaatctgaggaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

138

Amino Acids

15.33

Weight (kDa)

5.48

Isoelectric Point (pI)

38.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018485)

Species	Orthologous Gene IDs
malus_domestica	MD07G1129100.v1.1 MD11G1161600.v1.1 MD11G1249100.v1.1 MD13G1188300.v1.1
prunus_persica	Prupe.6G154500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459261
rosa_laevigata	RLG00000006584
rosa_multiflora	Rmu_sc0002093.1_g000018
rosa_samantha	Rh4AG341800 Rh4DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	30
AccII	CGCG	1 cut(s)	10
AciI	CCGC	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	146, 166, 260, 392, 400
AjnI	CCWGG	2 cut(s)	72, 268
AluBI	AGCT	2 cut(s)	70, 182
AluI	AGCT	2 cut(s)	70, 182
Alw21I	GWGCWC	2 cut(s)	72, 184
Alw26I	GTCTC	1 cut(s)	376
AoxI	GGCC	1 cut(s)	44
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	2 cut(s)	98, 264
AspLEI	GCGC	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	72, 184, 315
Bbv12I	GWGCWC	2 cut(s)	72, 184
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	2 cut(s)	74, 270
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	74, 270
BmrFI	CCNGG	2 cut(s)	74, 270
BmrI	ACTGGG	1 cut(s)	114
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	102
Bse1I	ACTGG	2 cut(s)	109, 390
BseBI	CCWGG	2 cut(s)	74, 270
BseMII	CTCAG	2 cut(s)	371, 396
BseNI	ACTGG	2 cut(s)	109, 390
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	72, 184
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	72, 184, 315
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	372, 397
BspFNI	CGCG	1 cut(s)	10
BspQI	GCTCTTC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	109, 390
Bst2UI	CCWGG	2 cut(s)	74, 270
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	22, 33, 44
BstDEI	CTNAG	2 cut(s)	380, 405
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 26, 67
BstNI	CCWGG	2 cut(s)	74, 270
BstSCI	CCNGG	2 cut(s)	72, 268
BstUI	CGCG	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	22, 33, 44
CfoI	GCGC	1 cut(s)	31
CviAII	CATG	3 cut(s)	57, 290, 364
CviJI	RGCY	7 cut(s)	15, 24, 46, 70, 182, 313, 379
CviKI_1	RGCY	7 cut(s)	15, 24, 46, 70, 182, 313, 379
DdeI	CTNAG	2 cut(s)	380, 405
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	2 cut(s)	70, 182
Eco24I	GRGCYC	3 cut(s)	72, 184, 315
Eco53kI	GAGCTC	2 cut(s)	70, 182
EcoICRI	GAGCTC	2 cut(s)	70, 182
EcoRII	CCWGG	2 cut(s)	72, 268
EcoT38I	GRGCYC	3 cut(s)	72, 184, 315
FaeI	CATG	3 cut(s)	60, 293, 367
FaiI	YATR	8 cut(s)	58, 88, 125, 131, 291, 306, 347, 365
FatI	CATG	3 cut(s)	56, 289, 363
FauI	CCCGC	1 cut(s)	3
FriOI	GRGCYC	3 cut(s)	72, 184, 315
FspBI	CTAG	1 cut(s)	240
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	3 cut(s)	60, 293, 367
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	5, 194
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	2 cut(s)	191, 325
HpyCH4V	TGCA	2 cut(s)	42, 82
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 26, 67
HpyF3I	CTNAG	2 cut(s)	380, 405
Hsp92II	CATG	3 cut(s)	60, 293, 367
HspAI	GCGC	1 cut(s)	29
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	75, 179
MaeI	CTAG	1 cut(s)	240
MboII	GAAGA	2 cut(s)	176, 293
MhlI	GDGCHC	3 cut(s)	72, 184, 315
MluCI	AATT	2 cut(s)	170, 243
MnlI	CCTC	5 cut(s)	126, 161, 198, 245, 400
MroXI	GAANNNNTTC	2 cut(s)	98, 264
MseI	TTAA	1 cut(s)	336
MspR9I	CCNGG	2 cut(s)	74, 270
MvaI	CCWGG	2 cut(s)	74, 270
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	21, 26, 67
NlaIII	CATG	3 cut(s)	60, 293, 367
NsbI	TGCGCA	1 cut(s)	30
NspV	TTCGAA	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	98, 264
PfeI	GAWTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	336
Psp124BI	GAGCTC	2 cut(s)	72, 184
Psp6I	CCWGG	2 cut(s)	72, 268
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	72, 268
SacI	GAGCTC	2 cut(s)	72, 184
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	74, 270
SduI	GDGCHC	3 cut(s)	72, 184, 315
SetI	ASST	4 cut(s)	72, 78, 124, 184
SfuI	TTCGAA	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	2 cut(s)	170, 243
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	2 cut(s)	72, 184
StyD4I	CCNGG	2 cut(s)	72, 268
TaqI	TCGA	3 cut(s)	153, 197, 230
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	170, 243
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	109
TspRI	CASTG	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	336
XmnI	GAANNNNTTC	2 cut(s)	98, 264
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.