Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0018485

Physical Location & Seq

Genomic Coordinates Forward (+)

56637758 .. 56638103

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCGCTTTCCAGAACCAGCTTCACGGTGTAATTCAGACTTCATCGGTGACTTGCCGGAGCTCCAGGTCCTGCAGCTATGGGAGAAAAACTTCACTGGGTCTATTCCTCAGGGTTTGGGCAGAAATGGGGAGCTGCAAATCCTAGACTTGTCTTCGAATGGTCAGTCTGATTCAAGGCGGAGGAGGTCGGCACCTGAGCTGGAGAATTCGGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

71

Amino Acids

7.93

Weight (kDa)

4.93

Isoelectric Point (pI)

90.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018485)

Species	Orthologous Gene IDs
malus_domestica	MD07G1129100.v1.1 MD11G1161600.v1.1 MD11G1249100.v1.1 MD13G1188300.v1.1
prunus_persica	Prupe.6G154500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459261
rosa_laevigata	RLG00000006584
rosa_multiflora	Rmu_sc0002093.1_g000018
rosa_samantha	Rh4AG341800 Rh4DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	20, 61, 76, 133, 199
AluI	AGCT	5 cut(s)	20, 61, 76, 133, 199
Alw21I	GWGCWC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	73, 133
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	67
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	85, 120
BciT130I	CCWGG	1 cut(s)	65
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	74, 134
BlsI	GCNGC	2 cut(s)	75, 135
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	122, 186
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	85, 120
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	121, 187
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	75
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	190
BsrI	ACTGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	108, 195
BstHHI	GCGC	1 cut(s)	6
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	85, 120
BstV2I	GAAGAC	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	67
CviJI	RGCY	5 cut(s)	20, 61, 76, 133, 199
CviKI_1	RGCY	5 cut(s)	20, 61, 76, 133, 199
DdeI	CTNAG	2 cut(s)	108, 195
EciI	GGCGGA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	61
Eco81I	CCTNAGG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	63
FaiI	YATR	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	74, 134
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	74, 134
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	74, 134
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	37, 169
Hpy188III	TCNNGA	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	73, 136
HpyF3I	CTNAG	2 cut(s)	108, 195
HspAI	GCGC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	58, 66, 130
Lsp1109I	GCAGC	2 cut(s)	85, 120
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	2 cut(s)	31, 205
MnlI	CCTC	3 cut(s)	117, 174, 177
MroXI	GAANNNNTTC	1 cut(s)	89
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	75, 135
PpuMI	RGGWCCY	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	63
SatI	GCNGC	2 cut(s)	74, 134
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	22, 63, 69, 78, 135, 188, 196, 201
SfcI	CTRYAG	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	155
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	2 cut(s)	31, 205
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	31, 205
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	73, 133
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.