MD13G1188300.v1.1

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
16005485 .. 16007440
1956 bp
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UTR
Exon/CDS
Intron
MD13G1188300.v1.1.491

Sequence Viewer

Length: 231 bp
ATGAAATGGCTTTCTCTAATCCAATTTTTCTTTTTCCCTCATTTAAGGCACTTGGAAGATAATCATTTTAGTGGAAATATCCCTTCATCGCTCAGGAGCATTGATAGCTTGCATGAACTTTTCTTACAAAACAATAATTTGACTGGTGAAGTTCCTGATAGCCTTGTTGGAAAATCTGGTATGGACCTAAGGACGTCTGGAAATTCTTTTTCAGCGCCGCCGCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

8.54

Weight (kDa)

6.0

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018485)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AciI CCGC 2 cut(s) 218, 221
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 194
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 218
BisI GCNGC 2 cut(s) 218, 221
BlsI GCNGC 2 cut(s) 219, 222
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 148
Bse21I CCTNAGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 148
BspACI CCGC 2 cut(s) 218, 221
BspCNI CTCAG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 92, 188
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 10, 108, 162
CviKI_1 RGCY 3 cut(s) 10, 108, 162
DdeI CTNAG 2 cut(s) 92, 188
Eco47I GGWCC 1 cut(s) 184
Eco81I CCTNAGG 1 cut(s) 188
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 182
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 218, 221
Fsp4HI GCNGC 2 cut(s) 218, 221
GlaI GCGC 1 cut(s) 216
GluI GCNGC 2 cut(s) 218, 221
HaeII RGCGCY 1 cut(s) 218
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HphI GGTGA 1 cut(s) 158
Hpy188III TCNNGA 3 cut(s) 94, 155, 198
HpyAV CCTTC 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 92, 188
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 5 cut(s) 79, 129, 162, 168, 183
MaeII ACGT 1 cut(s) 194
MboII GAAGA 1 cut(s) 68
MluCI AATT 3 cut(s) 23, 136, 202
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 1 cut(s) 48
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 105
NlaIII CATG 1 cut(s) 116
PkrI GCNGC 2 cut(s) 219, 222
PspPI GGNCC 1 cut(s) 184
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 218, 221
Sau96I GGNCC 1 cut(s) 184
SetI ASST 3 cut(s) 110, 189, 197
SgeI CNNG 9 cut(s) 64, 106, 121, 125, 156, 167, 176, 189, 210
SinI GGWCC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 3 cut(s) 23, 136, 202
SsiI CCGC 2 cut(s) 218, 221
TaiI ACGT 1 cut(s) 197
TasI AATT 3 cut(s) 23, 136, 202
TauI GCSGC 2 cut(s) 220, 223
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 17, 75, 129
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 202
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.