Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018485

Physical Location & Seq

Genomic Coordinates Reverse (-)

8714977 .. 8717371

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCGCTTTCCAGTTTCCAGGTCATTAACAGACAGAGTTGGGCTACCTCAAAAGCTTGAAATCCATGGACTTATCCAACAGCTTGTTCTCCTGCGAGATTCTGGTCTATTTCGCAGAGGTAAAGAACTTAACGCTTCTCAATCTCTTCCTGAACCAGCTTCACGGCGCCATTCGGACTTCATCGGTGACTTGCCGGAGCTTCAGGTCCTGCAGCTATGGGAGAACAACTTCACTGGGTCTATTCCTCAGGGTTTGGGCAAAAATGGGGAGCTGCAAATCTTGGACTTGTCTTCGAACGCACTCGCGGTTCCGGCTAAGACCAGTCCGACGTTGATGAAGCATGGTGATGATCCGCAACCTCTGGACTGCCCCAACATGCAGTTATGCTTCCAGATGAAGTCAACCAGACTGGAAAAACCACGCCTCTGTAGTACAGACCACTGCCATCATTATCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0033612 GO:0040008 GO:0043621 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

7.01

Isoelectric Point (pI)

62.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018485)

Species	Orthologous Gene IDs
malus_domestica	MD07G1129100.v1.1 MD11G1161600.v1.1 MD11G1249100.v1.1 MD13G1188300.v1.1
prunus_persica	Prupe.6G154500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0459261
rosa_laevigata	RLG00000006584
rosa_multiflora	Rmu_sc0002093.1_g000018
rosa_samantha	Rh4AG341800 Rh4DG344300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AccII	CGCG	1 cut(s)	305
AciI	CCGC	2 cut(s)	305, 353
AclWI	GGATC	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	6 cut(s)	55, 82, 158, 199, 214, 271
AluI	AGCT	6 cut(s)	55, 82, 158, 199, 214, 271
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	211, 271
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	2 cut(s)	6, 168
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	197, 356
AsuII	TTCGAA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	223, 258
BccI	CCATC	1 cut(s)	453
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	19
BfmI	CTRYAG	2 cut(s)	209, 427
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	2 cut(s)	212, 272
BlsI	GCNGC	2 cut(s)	213, 273
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	167, 309
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	64
Bse1I	ACTGG	4 cut(s)	11, 238, 321, 414
Bse21I	CCTNAGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	4 cut(s)	11, 238, 321, 414
BseXI	GCAGC	2 cut(s)	223, 258
Bsh1236I	CGCG	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	194, 311
Bsp119I	TTCGAA	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	2 cut(s)	305, 353
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	167, 309
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	165
BsrI	ACTGG	4 cut(s)	11, 238, 321, 414
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	166
BstBI	TTCGAA	1 cut(s)	293
BstDEI	CTNAG	2 cut(s)	246, 315
BstDSI	CCRYGG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	6, 168
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	2 cut(s)	209, 427
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	223, 258
BstV2I	GAAGAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	64
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	231, 439
CaiI	CAGNNNCTG	1 cut(s)	208
CfoI	GCGC	2 cut(s)	6, 168
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	3 cut(s)	65, 341, 376
CviJI	RGCY	8 cut(s)	43, 55, 82, 158, 199, 214, 271, 314
CviKI_1	RGCY	8 cut(s)	43, 55, 82, 158, 199, 214, 271, 314
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	2 cut(s)	246, 315
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	3 cut(s)	68, 344, 379
FaiI	YATR	5 cut(s)	66, 217, 342, 377, 385
FatI	CATG	3 cut(s)	64, 340, 375
Fnu4HI	GCNGC	2 cut(s)	212, 272
Fsp4HI	GCNGC	2 cut(s)	212, 272
GlaI	GCGC	2 cut(s)	5, 167
GluI	GCNGC	2 cut(s)	212, 272
HaeII	RGCGCY	1 cut(s)	169
HapII	CCGG	2 cut(s)	194, 311
HhaI	GCGC	2 cut(s)	6, 168
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	68, 344, 379
Hin6I	GCGC	2 cut(s)	4, 166
HinP1I	GCGC	2 cut(s)	4, 166
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	194, 311
HphI	GGTGA	2 cut(s)	197, 356
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	2 cut(s)	175, 327
Hpy188III	TCNNGA	4 cut(s)	149, 362, 391, 455
Hpy8I	GTNNAC	1 cut(s)	402
Hpy99I	CGWCG	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	211, 274, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	246, 315
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	68, 344, 379
HspAI	GCGC	2 cut(s)	4, 166
KasI	GGCGCC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	196, 268
Lsp1109I	GCAGC	2 cut(s)	223, 258
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	137, 282
Mly113I	GGCGCC	1 cut(s)	166
MmeI	TCCRAC	2 cut(s)	100, 350
MnlI	CCTC	5 cut(s)	57, 110, 255, 369, 434
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	26, 129
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	2 cut(s)	194, 311
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	311
NarI	GGCGCC	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	68, 344, 379
NlaIV	GGNNCC	2 cut(s)	167, 309
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	213, 273
PluTI	GGCGCC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	167, 309
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	26, 129
SatI	GCNGC	2 cut(s)	212, 272
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	19
SfcI	CTRYAG	2 cut(s)	209, 427
SfoI	GGCGCC	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	293
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	345
SsiI	CCGC	2 cut(s)	305, 353
SspDI	GGCGCC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	64
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	293
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	26, 129
Tru9I	TTAA	2 cut(s)	26, 129
TscAI	CASTG	2 cut(s)	238, 446
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	211, 271
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	169, 350, 410
TspRI	CASTG	2 cut(s)	238, 446
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.