Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0019786

Physical Location & Seq

Genomic Coordinates Reverse (-)

30124518 .. 30125950

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1206800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAACAGAAGGAACTTGCTTCTGCTCAAGATCCTTCTGTTTCTATTTGCCTTAAACTCCCTCTCTCTCTTCCTATACTTCACTTCCAACTCCAGAACACTAACTCCAACCCAAACCCAATCCCACCACTCTCTCTCCCTCAACCGCCTCCCCTTAACCGATCAGAACCGCCGCCACCCGCACCGCTACTCGAAGCCATGGCCCATTTTACCCTCTTACCTCCCCTGGTCCCAGACAACCCAGGTCCCCTTTCGCTCCTGCGAGGCTTATTTCGGCAATGGCTTCACCACCAGGGTCGATCTCTTGAAACCCATGATTGATTTGAGCTCCAATCGCATGGGTTGGTTCAGGTGCTGGTTCAGAGAGACCTTGAGGAGCTCAGTGTGCGAAGGAGGGGGCCTCCGGATGGACCCAGAGAAGATTAAGATGTCGAGGGGTGGTGAGGTTTTGGAGGAGGTGATTGGGAGAGGAGAGGAGGAGGAGCTGCCTGAGTATCAATACGGTGCATTTGAGATTAATGGAGGAGATGGGGTTGGTGGAGGAGGGGATCAAAGGCTTGTGACCCAAGAATCTCTTGATGGGTATGTGCCAAAAGGTCAGACTGATCAGCACACTATGAGAGAACTGATTGGGTCGATTCGGATAGTGCCCACCGCAGAGTTTCAGTGCAATGAGTGGATTGAAGAGCCAACACTTCTGGTGACACGCTTTGAGTATGCAAATCTCTTCCACACATTCACGGATTGGTACAGCGCTTATGTAGCTTCAAGAGTCACTGGCTTGCCAAATCGACCCCATTTGGTCTTTTTAGAGGGCCACTGTATGGTACGTGGGTTTGATTTTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

284

Amino Acids

32.57

Weight (kDa)

6.46

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019786)

Species	Orthologous Gene IDs
malus_domestica	MD11G1206800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079391
rosa_multiflora	Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003150
rosa_rugosa	Rorug05G0467800
rosa_samantha	Rh5AG521200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	6 cut(s)	145, 169, 172, 179, 184, 654
AclWI	GGATC	2 cut(s)	25, 555
AfaI	GTAC	2 cut(s)	749, 828
AfeI	AGCGCT	1 cut(s)	754
AfiI	CCNNNNNNNGG	2 cut(s)	406, 823
AgsI	TTSAA	3 cut(s)	307, 683, 768
AjnI	CCWGG	3 cut(s)	224, 240, 290
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	4 cut(s)	327, 378, 484, 764
AluI	AGCT	4 cut(s)	327, 378, 484, 764
Alw21I	GWGCWC	2 cut(s)	329, 380
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	25, 555
AlwNI	CAGNNNCTG	1 cut(s)	354
Aor13HI	TCCGGA	1 cut(s)	402
Aor51HI	AGCGCT	1 cut(s)	754
AoxI	GGCC	3 cut(s)	200, 397, 814
ApeKI	GCWGC	1 cut(s)	484
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	6 cut(s)	201, 228, 244, 397, 409, 814
AsuHPI	GGTGA	4 cut(s)	277, 452, 469, 712
AvaII	GGWCC	3 cut(s)	228, 244, 409
BaeGI	GKGCMC	1 cut(s)	651
BaeI	ACNNNNGTAYC	2 cut(s)	818, 851
BanII	GRGCYC	2 cut(s)	329, 380
Bbv12I	GWGCWC	2 cut(s)	329, 380
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	3 cut(s)	400, 521, 572
BciT130I	CCWGG	3 cut(s)	226, 242, 292
BclI	TGATCA	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	359
BfoI	RGCGCY	1 cut(s)	756
BisI	GCNGC	2 cut(s)	172, 485
BlsI	GCNGC	2 cut(s)	173, 486
Bme1390I	CCNGG	3 cut(s)	226, 242, 292
Bme18I	GGWCC	3 cut(s)	228, 244, 409
BmgT120I	GGNCC	6 cut(s)	201, 228, 244, 397, 409, 814
BmiI	GGNNCC	4 cut(s)	230, 246, 398, 411
BmrFI	CCNGG	3 cut(s)	226, 242, 292
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	2 cut(s)	11, 391
BsaAI	YACGTR	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	4 cut(s)	197, 224, 240, 291
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 119, 149, 516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 823
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	2 cut(s)	283, 676
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	226, 242, 292
BseDI	CCNNGG	4 cut(s)	197, 224, 240, 291
BseGI	GGATG	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	406, 823
BseMI	GCAATG	2 cut(s)	283, 676
BseMII	CTCAG	2 cut(s)	393, 480
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	8 cut(s)	388, 467, 483, 488, 491, 494, 537, 555
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	1 cut(s)	471
BshFI	GGCC	3 cut(s)	202, 399, 816
BsiHKAI	GWGCWC	2 cut(s)	329, 380
BsiSI	CCGG	1 cut(s)	403
BslFI	GGGAC	2 cut(s)	214, 230
BslI	CCNNNNNNNGG	2 cut(s)	406, 823
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	214, 230
BsnI	GGCC	3 cut(s)	202, 399, 816
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	329, 380, 651
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	5 cut(s)	30, 160, 298, 547, 604
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	6 cut(s)	145, 169, 172, 179, 184, 654
BspANI	GGCC	3 cut(s)	202, 399, 816
BspCNI	CTCAG	2 cut(s)	392, 481
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	4 cut(s)	230, 246, 398, 411
BspPI	GGATC	2 cut(s)	25, 555
BspQI	GCTCTTC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	283, 676
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	4 cut(s)	197, 224, 240, 291
BssMI	GATC	5 cut(s)	30, 160, 298, 547, 604
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	3 cut(s)	226, 242, 292
Bst4CI	ACNGT	2 cut(s)	503, 821
Bst6I	CTCTTC	3 cut(s)	74, 678, 731
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	1 cut(s)	782
BstDEI	CTNAG	2 cut(s)	379, 489
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	411
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	5 cut(s)	33, 163, 301, 550, 607
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	30, 160, 298, 547, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 384, 761
BstNI	CCWGG	3 cut(s)	226, 242, 292
BstSCI	CCNGG	3 cut(s)	224, 240, 290
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	202, 399, 816
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	4 cut(s)	387, 671, 774, 817
Cac8I	GCNNGC	1 cut(s)	782
CaiI	CAGNNNCTG	1 cut(s)	354
CfoI	GCGC	1 cut(s)	755
Cfr13I	GGNCC	6 cut(s)	201, 228, 244, 397, 409, 814
Csp6I	GTAC	2 cut(s)	748, 827
CviAII	CATG	3 cut(s)	198, 313, 337
CviQI	GTAC	2 cut(s)	748, 827
DdeI	CTNAG	2 cut(s)	379, 489
DpnI	GATC	5 cut(s)	32, 162, 300, 549, 606
DpnII	GATC	5 cut(s)	30, 160, 298, 547, 604
Eam1104I	CTCTTC	3 cut(s)	74, 678, 731
EarI	CTCTTC	3 cut(s)	74, 678, 731
Ecl136II	GAGCTC	2 cut(s)	327, 378
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	329, 380
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	3 cut(s)	228, 244, 409
Eco47III	AGCGCT	1 cut(s)	754
Eco53kI	GAGCTC	2 cut(s)	327, 378
EcoICRI	GAGCTC	2 cut(s)	327, 378
EcoO109I	RGGNCCY	2 cut(s)	244, 397
EcoRII	CCWGG	3 cut(s)	224, 240, 290
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	329, 380
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	3 cut(s)	201, 316, 340
FaiI	YATR	9 cut(s)	76, 199, 314, 338, 585, 617, 717, 759, 824
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	2 cut(s)	214, 230
FatI	CATG	3 cut(s)	197, 312, 336
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	2 cut(s)	172, 485
FokI	GGATG	1 cut(s)	418
FriOI	GRGCYC	2 cut(s)	329, 380
Fsp4HI	GCNGC	2 cut(s)	172, 485
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	2 cut(s)	172, 485
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	202, 399, 816
HapII	CCGG	1 cut(s)	403
HhaI	GCGC	1 cut(s)	755
Hin1II	CATG	3 cut(s)	201, 316, 340
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	3 cut(s)	569, 637, 771
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	4 cut(s)	277, 452, 469, 712
Hpy188I	TCNGA	4 cut(s)	165, 362, 600, 642
Hpy188III	TCNNGA	6 cut(s)	28, 93, 304, 403, 575, 768
HpyAV	CCTTC	3 cut(s)	3, 44, 383
HpyCH4III	ACNGT	2 cut(s)	503, 821
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	3 cut(s)	506, 669, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 384, 761
HpyF3I	CTNAG	2 cut(s)	379, 489
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	3 cut(s)	201, 316, 340
HspAI	GCGC	1 cut(s)	753
Kpn2I	TCCGGA	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	5 cut(s)	30, 160, 298, 547, 604
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	4 cut(s)	260, 332, 375, 481
Lsp1109I	GCAGC	1 cut(s)	471
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	3 cut(s)	559, 700, 772
MalI	GATC	5 cut(s)	32, 162, 300, 549, 606
MboI	GATC	5 cut(s)	30, 160, 298, 547, 604
MboII	GAAGA	4 cut(s)	61, 430, 695, 718
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	329, 380, 651
MlyI	GAGTC	1 cut(s)	780
MmeI	TCCRAC	2 cut(s)	111, 131
MroI	TCCGGA	1 cut(s)	402
MseI	TTAA	4 cut(s)	53, 155, 423, 516
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	3 cut(s)	226, 242, 292
MvaI	CCWGG	3 cut(s)	226, 242, 292
MwoI	GCNNNNNNNGC	3 cut(s)	333, 384, 761
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	30, 160, 298, 547, 604
NlaIII	CATG	3 cut(s)	201, 316, 340
NlaIV	GGNNCC	4 cut(s)	230, 246, 398, 411
NmuCI	GTSAC	3 cut(s)	559, 700, 772
PciSI	GCTCTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	569, 637
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	2 cut(s)	173, 486
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	244
PshBI	ATTAAT	1 cut(s)	516
Psp124BI	GAGCTC	2 cut(s)	329, 380
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	224, 240, 290
PspGI	CCWGG	3 cut(s)	224, 240, 290
PspN4I	GGNNCC	4 cut(s)	230, 246, 398, 411
PspPI	GGNCC	6 cut(s)	201, 228, 244, 397, 409, 814
PspPPI	RGGWCCY	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	749, 828
RsaNI	GTAC	2 cut(s)	748, 827
SacI	GAGCTC	2 cut(s)	329, 380
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	53, 155, 423, 516
SatI	GCNGC	2 cut(s)	172, 485
Sau3AI	GATC	5 cut(s)	30, 160, 298, 547, 604
Sau96I	GGNCC	6 cut(s)	201, 228, 244, 397, 409, 814
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	3 cut(s)	226, 242, 292
SduI	GDGCHC	3 cut(s)	329, 380, 651
SinI	GGWCC	3 cut(s)	228, 244, 409
SmlI	CTYRAG	2 cut(s)	26, 370
SmoI	CTYRAG	2 cut(s)	26, 370
SsiI	CCGC	6 cut(s)	145, 169, 172, 179, 184, 654
SstI	GAGCTC	2 cut(s)	329, 380
StyD4I	CCNGG	3 cut(s)	224, 240, 290
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	503, 821
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	5 cut(s)	191, 297, 431, 635, 790
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	2 cut(s)	569, 637
Tru1I	TTAA	4 cut(s)	53, 155, 423, 516
Tru9I	TTAA	4 cut(s)	53, 155, 423, 516
TscAI	CASTG	4 cut(s)	387, 671, 781, 824
TseFI	GTSAC	3 cut(s)	559, 700, 772
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	3 cut(s)	559, 700, 772
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	4 cut(s)	387, 671, 781, 824
Van91I	CCANNNNNTGG	1 cut(s)	823
VpaK11BI	GGWCC	3 cut(s)	228, 244, 409
VspI	ATTAAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.