Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025026.1

Orthogroup ID

OG0019786

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 987

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggtgccggagagggtcaagatgtcgatcggcggcgaggttttggaggatgtgattgggagaggggaggaggaggagttgccggagtttcgaaacggtgcgtttgaggtcgatggtggggttggtggaggaggagaggagagcgggcttgtgagtagagagtttcttgatgagtatgtgccgcgtggtgagattgggaagcatactatgagggagctgatcgggtcgattcgggttgtgcccagtaaagagtttcagtgcagtgggtggattgaggagccaacgcttctggtgacacggtttgagtatgcaaatgttttccacacattcacggattggtatagcggttacgtggcttccagagtcactggcttacctagccggcctcatgttgtctttgttgatggccattgtagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

139

Amino Acids

15.49

Weight (kDa)

4.84

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019786)

Species	Orthologous Gene IDs
malus_domestica	MD11G1206800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079391
rosa_multiflora	Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003150
rosa_rugosa	Rorug05G0467800
rosa_samantha	Rh5AG521200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	144
AccII	CGCG	1 cut(s)	184
AciI	CCGC	4 cut(s)	33, 144, 182, 345
AcoI	YGGCCR	1 cut(s)	406
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AoxI	GGCC	2 cut(s)	383, 406
AsuHPI	GGTGA	2 cut(s)	200, 304
AsuII	TTCGAA	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	4
BccI	CCATC	2 cut(s)	107, 398
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	34, 182
BlsI	GCNGC	2 cut(s)	35, 183
BmiI	GGNNCC	2 cut(s)	6, 279
BmrI	ACTGGG	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	91
BsaAI	YACGTR	1 cut(s)	352
BsaBI	GATNNNNATC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	243, 373
Bse8I	GATNNNNATC	1 cut(s)	26
BseGI	GGATG	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	26
BseNI	ACTGG	2 cut(s)	243, 373
BseRI	GAGGAG	7 cut(s)	83, 86, 89, 144, 147, 152, 290
BseSI	GKGCMC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	385, 408
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	8, 83, 382
BsnI	GGCC	2 cut(s)	385, 408
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	27, 219
BspACI	CCGC	4 cut(s)	33, 144, 182, 345
BspANI	GGCC	2 cut(s)	385, 408
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	6, 279
BspT104I	TTCGAA	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	243, 373
BssAI	RCCGGY	1 cut(s)	381
BssMI	GATC	2 cut(s)	27, 219
Bst4CI	ACNGT	2 cut(s)	98, 300
BstBAI	YACGTR	1 cut(s)	352
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	146, 383
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	30, 222
BstMBI	GATC	2 cut(s)	27, 219
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	385, 408
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	263, 268, 366
Cac8I	GCNNGC	2 cut(s)	146, 383
Cfr10I	RCCGGY	1 cut(s)	381
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	8 cut(s)	148, 217, 280, 356, 372, 381, 385, 408
CviKI_1	RGCY	8 cut(s)	148, 217, 280, 356, 372, 381, 385, 408
DpnI	GATC	2 cut(s)	29, 221
DpnII	GATC	2 cut(s)	27, 219
EaeI	YGGCCR	1 cut(s)	406
FaeI	CATG	1 cut(s)	392
FaiI	YATR	6 cut(s)	177, 204, 209, 309, 342, 390
FatI	CATG	1 cut(s)	388
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	34, 182
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	34, 182
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	2 cut(s)	34, 182
HaeIII	GGCC	2 cut(s)	385, 408
HapII	CCGG	3 cut(s)	8, 83, 382
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	2 cut(s)	229, 363
HpaII	CCGG	3 cut(s)	8, 83, 382
HphI	GGTGA	2 cut(s)	200, 304
Hpy188III	TCNNGA	3 cut(s)	19, 167, 360
HpyCH4III	ACNGT	2 cut(s)	98, 300
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	261, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	27, 219
LmnI	GCTCC	2 cut(s)	214, 277
LpnPI	CCDG	7 cut(s)	21, 96, 256, 275, 354, 373, 395
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	292, 347, 364
MalI	GATC	2 cut(s)	29, 221
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	2 cut(s)	27, 219
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	408
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	372
Mox20I	TGGCCA	1 cut(s)	408
MroNI	GCCGGC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	408
MspI	CCGG	3 cut(s)	8, 83, 382
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	378
NaeI	GCCGGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	27, 219
NgoMIV	GCCGGC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	6, 279
NmuCI	GTSAC	2 cut(s)	292, 364
NspV	TTCGAA	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	35, 183
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
Ppu21I	YACGTR	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	6, 279
PvuI	CGATCG	1 cut(s)	30
SatI	GCNGC	2 cut(s)	34, 182
Sau3AI	GATC	2 cut(s)	27, 219
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	5 cut(s)	42, 111, 219, 354, 379
SfuI	TTCGAA	1 cut(s)	91
SsiI	CCGC	4 cut(s)	33, 144, 182, 345
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	98, 300
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	4 cut(s)	26, 91, 111, 227
TauI	GCSGC	2 cut(s)	36, 184
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	3 cut(s)	263, 268, 373
TseFI	GTSAC	2 cut(s)	292, 364
Tsp45I	GTSAC	2 cut(s)	292, 364
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	3 cut(s)	263, 268, 373
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.