Rroxscaffold_1G00003150

Beta-(1,2)-xylosyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
3658561 .. 3661589
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003150.1

Sequence Viewer

Length: 984 bp
ATGGCCCCCGACGAGAAGCTCACCGGACCGGATCAAACCCCCCGCCACATATACCGCTTCTCAAAGCCATGGCTGATCCTCCCCTCCTACCTCCCCTGGTCCCCGACCCCAAACGCGGAGTTCCGCTACTGCGAGGCCTACTTCGGCAACGGCTTCACCCGCCGGGTCGATCTCCTGAAGCCCACTAAAGATTCCGGCAGCTGGTTCCGGTGCGCGTTCAGCGAGACCCTGAGGAGCTCGGTGTGCGAGGGACGGAGGATCCGGATGGTGCCGGAGAGGGTGAAGTTGCCGATTGGCGGCGAGGTTTTGGAGGATGTGATTGGGAGAGGGGAGGAGGAGGAGTTGTCTGAGTTTCGAAACTGTGCGTTTGAGTTTCGAAACGCTTCCAGAGTCACCGGCTTACCTAGCCGGCCTCATGTTGTCTTTGTAGATTGGCCATTACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCCTTAGATATGCGAAAAGCTTTAGTGGTCCAGTTTAAGCTTTGGCAGCACCCTGATGACCAGAAAACTGCACGACTGTCTGAGTTTGGAGAAATGAGTAGAGCTGCTTTTGGAATTCCAGTGCATAGGCAGCATATTGAGAAGCAAGCCTCAGGTCTCAATATCCTTTTTGTTCGGCATGAAGATTATCTACCGCATCCACGTCACGGTGGTACAGTTGAATCAAGGTTAAGCAATGAACAAGAACTCTTTGATGCCTTAAAGAGCTGGGTGTCGAATCACAAGGAATGCAAATTAAACCTACTGAATGGATTGTTTGCACACATGTCGATGAAAGAACAAATCCGGGCCATTCAAGATGCTTCTGTTATTATTGGTGCTCATGGTGCCGGTCTCATGCATATAGTATCTGCATTGCCGAAAACCGTGGTTCTGGGGAGACTAAAAGCAGCCAATATAGACGGCTTTAATTGCCCAATGGAAAGTTTTGGAATATCATGCCATTAA

Protein Analysis

327

Amino Acids

37.24

Weight (kDa)

8.99

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 222 - 304 2.4e-10 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019786)

Species Orthologous Gene IDs
malus_domestica MD11G1206800.v1.1
rosa_chinensis RchiOBHm_Chr5g0079391
rosa_multiflora Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii Rroxscaffold_1G00003150
rosa_rugosa Rorug05G0467800
rosa_samantha Rh5AG521200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 268, 863
AccII CGCG 2 cut(s) 116, 215
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 7 cut(s) 43, 55, 116, 124, 160, 297, 671
AclWI GGATC 4 cut(s) 39, 70, 253, 266
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 1 cut(s) 591
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 691
AfiI CCNNNNNNNGG 4 cut(s) 115, 201, 296, 683
AflIII ACRYGT 1 cut(s) 801
AgsI TTSAA 2 cut(s) 698, 833
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 7 cut(s) 19, 201, 237, 497, 517, 581, 744
AluI AGCT 7 cut(s) 19, 201, 237, 497, 517, 581, 744
Alw21I GWGCWC 2 cut(s) 239, 859
Alw26I GTCTC 4 cut(s) 218, 638, 875, 910
AlwI GGATC 4 cut(s) 39, 70, 253, 266
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 5 cut(s) 3, 135, 410, 434, 825
ApeKI GCWGC 5 cut(s) 198, 523, 581, 607, 926
ApoI RAATTY 1 cut(s) 591
Asp700I GAANNNNTTC 1 cut(s) 382
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 5 cut(s) 4, 26, 99, 505, 825
AsuC2I CCSGG 2 cut(s) 164, 824
AsuHPI GGTGA 4 cut(s) 13, 148, 292, 385
AsuII TTCGAA 2 cut(s) 355, 376
AvaII GGWCC 3 cut(s) 26, 99, 505
AxyI CCTNAGG 2 cut(s) 230, 628
BalI TGGCCA 1 cut(s) 436
BamHI GGATCC 1 cut(s) 258
BanI GGYRCC 2 cut(s) 268, 863
BanII GRGCYC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 651, 683
Bbv12I GWGCWC 2 cut(s) 239, 859
BbvI GCAGC 5 cut(s) 210, 535, 568, 619, 938
BccI CCATC 1 cut(s) 259
BceAI ACGGC 2 cut(s) 166, 955
BcgI CGANNNNNNTGC 2 cut(s) 786, 820
BciT130I CCWGG 1 cut(s) 97
BcnI CCSGG 2 cut(s) 164, 824
BcoDI GTCTC 4 cut(s) 218, 638, 875, 910
BfaI CTAG 2 cut(s) 405, 476
BisI GCNGC 6 cut(s) 199, 298, 524, 582, 608, 927
BlsI GCNGC 6 cut(s) 200, 299, 525, 583, 609, 928
Bme1390I CCNGG 3 cut(s) 97, 164, 824
Bme18I GGWCC 3 cut(s) 26, 99, 505
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 5 cut(s) 4, 26, 99, 505, 825
BmiI GGNNCC 6 cut(s) 6, 101, 206, 260, 270, 865
BmrFI CCNGG 3 cut(s) 97, 164, 824
BmsI GCATC 3 cut(s) 682, 721, 826
Bpu14I TTCGAA 2 cut(s) 355, 376
BpuMI CCSGG 2 cut(s) 164, 824
BsaI GGTCTC 3 cut(s) 218, 638, 875
BsaJI CCNNGG 3 cut(s) 68, 95, 903
BsaWI WCCGGW 4 cut(s) 23, 28, 207, 261
BsaXI ACNNNNNCTCC 4 cut(s) 326, 329, 356, 359
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 201, 296, 683
Bse118I RCCGGY 3 cut(s) 395, 408, 866
Bse1I ACTGG 2 cut(s) 508, 596
Bse21I CCTNAGG 2 cut(s) 230, 628
Bse3DI GCAATG 2 cut(s) 718, 890
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 68, 95, 903
BseGI GGATG 3 cut(s) 270, 319, 673
BseLI CCNNNNNNNGG 4 cut(s) 115, 201, 296, 683
BseMI GCAATG 2 cut(s) 718, 890
BseMII CTCAG 4 cut(s) 221, 339, 549, 642
BseNI ACTGG 2 cut(s) 508, 596
BseRI GAGGAG 4 cut(s) 247, 347, 350, 353
BseXI GCAGC 5 cut(s) 210, 535, 568, 619, 938
BseYI CCCAGC 1 cut(s) 744
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 2 cut(s) 116, 215
BshFI GGCC 5 cut(s) 5, 137, 412, 436, 827
BshNI GGYRCC 2 cut(s) 268, 863
BsiHKAI GWGCWC 2 cut(s) 239, 859
BslFI GGGAC 2 cut(s) 85, 264
BslI CCNNNNNNNGG 4 cut(s) 115, 201, 296, 683
BsmAI GTCTC 4 cut(s) 218, 638, 875, 910
BsmFI GGGAC 2 cut(s) 85, 264
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 5 cut(s) 5, 137, 412, 436, 827
Bso31I GGTCTC 3 cut(s) 218, 638, 875
Bsp119I TTCGAA 2 cut(s) 355, 376
Bsp1286I GDGCHC 2 cut(s) 239, 859
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 4 cut(s) 31, 75, 169, 258
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 7 cut(s) 43, 55, 116, 124, 160, 297, 671
BspANI GGCC 5 cut(s) 5, 137, 412, 436, 827
BspCNI CTCAG 4 cut(s) 222, 340, 550, 641
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 2 cut(s) 116, 215
BspLI GGNNCC 6 cut(s) 6, 101, 206, 260, 270, 865
BspPI GGATC 4 cut(s) 39, 70, 253, 266
BspT104I TTCGAA 2 cut(s) 355, 376
BspT107I GGYRCC 2 cut(s) 268, 863
BspTNI GGTCTC 3 cut(s) 218, 638, 875
BsrDI GCAATG 2 cut(s) 718, 890
BsrFI RCCGGY 3 cut(s) 395, 408, 866
BsrI ACTGG 2 cut(s) 508, 596
BssAI RCCGGY 3 cut(s) 395, 408, 866
BssECI CCNNGG 3 cut(s) 68, 95, 903
BssMI GATC 4 cut(s) 31, 75, 169, 258
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 5 cut(s) 362, 555, 686, 694, 904
BstBI TTCGAA 2 cut(s) 355, 376
BstC8I GCNNGC 2 cut(s) 410, 624
BstDEI CTNAG 5 cut(s) 230, 348, 481, 558, 628
BstDSI CCRYGG 2 cut(s) 68, 903
BstF5I GGATG 3 cut(s) 270, 319, 673
BstFNI CGCG 2 cut(s) 116, 215
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 34, 78, 172, 261
BstMAI GTCTC 4 cut(s) 218, 638, 875, 910
BstMBI GATC 4 cut(s) 31, 75, 169, 258
BstMWI GCNNNNNNNGC 8 cut(s) 159, 219, 243, 405, 523, 607, 863, 948
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 3 cut(s) 95, 162, 822
BstUI CGCG 2 cut(s) 116, 215
BstV1I GCAGC 5 cut(s) 210, 535, 568, 619, 938
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
Bsu36I CCTNAGG 2 cut(s) 230, 628
BsuRI GGCC 5 cut(s) 5, 137, 412, 436, 827
BtgI CCRYGG 2 cut(s) 68, 903
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 3 cut(s) 270, 319, 673
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 410, 624
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 3 cut(s) 395, 408, 866
Cfr13I GGNCC 5 cut(s) 4, 26, 99, 505, 825
CpoI CGGWCCG 1 cut(s) 26
Csp6I GTAC 1 cut(s) 690
CspI CGGWCCG 1 cut(s) 26
CviAII CATG 8 cut(s) 69, 416, 458, 656, 802, 860, 874, 975
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 5 cut(s) 230, 348, 481, 558, 628
DpnI GATC 4 cut(s) 33, 77, 171, 260
DpnII GATC 4 cut(s) 31, 75, 169, 258
EaeI YGGCCR 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 68
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 239
Eco31I GGTCTC 3 cut(s) 218, 638, 875
Eco47I GGWCC 3 cut(s) 26, 99, 505
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 197
Eco81I CCTNAGG 2 cut(s) 230, 628
EcoICRI GAGCTC 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 879
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 8 cut(s) 72, 419, 461, 659, 805, 863, 877, 978
FaqI GGGAC 2 cut(s) 85, 264
FatI CATG 8 cut(s) 68, 415, 457, 655, 801, 859, 873, 974
FauI CCCGC 2 cut(s) 50, 167
Fnu4HI GCNGC 6 cut(s) 199, 298, 524, 582, 608, 927
FokI GGATG 3 cut(s) 277, 326, 660
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 199, 298, 524, 582, 608, 927
FspBI CTAG 2 cut(s) 405, 476
GlaI GCGC 1 cut(s) 214
GluI GCNGC 6 cut(s) 199, 298, 524, 582, 608, 927
GsaI CCCAGC 1 cut(s) 748
HaeIII GGCC 5 cut(s) 5, 137, 412, 436, 827
HhaI GCGC 1 cut(s) 215
Hin1II CATG 8 cut(s) 72, 419, 461, 659, 805, 863, 877, 978
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HindIII AAGCTT 2 cut(s) 495, 515
HinfI GANTC 4 cut(s) 191, 390, 698, 754
HphI GGTGA 4 cut(s) 13, 148, 292, 385
Hpy188I TCNGA 2 cut(s) 349, 559
Hpy188III TCNNGA 4 cut(s) 175, 262, 387, 833
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 5 cut(s) 362, 555, 686, 694, 904
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 6 cut(s) 548, 601, 768, 797, 877, 890
HpyF10VI GCNNNNNNNGC 8 cut(s) 159, 219, 243, 405, 523, 607, 863, 948
HpyF3I CTNAG 5 cut(s) 230, 348, 481, 558, 628
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 8 cut(s) 72, 419, 461, 659, 805, 863, 877, 978
HspAI GCGC 1 cut(s) 213
Kpn2I TCCGGA 1 cut(s) 261
KroI GCCGGC 1 cut(s) 408
KroNI GCCGGC 1 cut(s) 410
Kzo9I GATC 4 cut(s) 31, 75, 169, 258
LmnI GCTCC 1 cut(s) 234
Lsp1109I GCAGC 5 cut(s) 210, 535, 568, 619, 938
LweI GCATC 3 cut(s) 682, 721, 826
MaeI CTAG 2 cut(s) 405, 476
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 2 cut(s) 391, 680
MalI GATC 4 cut(s) 33, 77, 171, 260
MboI GATC 4 cut(s) 31, 75, 169, 258
MboII GAAGA 2 cut(s) 463, 671
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 239, 859
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 4 cut(s) 445, 591, 770, 946
MluNI TGGCCA 1 cut(s) 436
MlyI GAGTC 1 cut(s) 399
Mox20I TGGCCA 1 cut(s) 436
Mph1103I ATGCAT 1 cut(s) 879
MroI TCCGGA 1 cut(s) 261
MroNI GCCGGC 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 382
MscI TGGCCA 1 cut(s) 436
MseI TTAA 6 cut(s) 513, 707, 737, 773, 945, 982
MslI CAYNNNNRTG 2 cut(s) 531, 806
Msp20I TGGCCA 1 cut(s) 436
MspA1I CMGCKG 1 cut(s) 201
MspR9I CCNGG 3 cut(s) 97, 164, 824
MunI CAATTG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 2 cut(s) 116, 215
MwoI GCNNNNNNNGC 8 cut(s) 159, 219, 243, 405, 523, 607, 863, 948
NaeI GCCGGC 1 cut(s) 410
NciI CCSGG 2 cut(s) 164, 824
NcoI CCATGG 1 cut(s) 68
NdeII GATC 4 cut(s) 31, 75, 169, 258
NgoMIV GCCGGC 1 cut(s) 408
NlaIII CATG 8 cut(s) 72, 419, 461, 659, 805, 863, 877, 978
NlaIV GGNNCC 6 cut(s) 6, 101, 206, 260, 270, 865
NmuCI GTSAC 2 cut(s) 391, 680
NsiI ATGCAT 1 cut(s) 879
NspI RCATGY 1 cut(s) 805
NspV TTCGAA 2 cut(s) 355, 376
PceI AGGCCT 1 cut(s) 137
PciI ACATGT 1 cut(s) 801
PctI GAATGC 1 cut(s) 770
PdiI GCCGGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 3 cut(s) 191, 698, 754
PkrI GCNGC 6 cut(s) 200, 299, 525, 583, 609, 928
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PscI ACATGT 1 cut(s) 801
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 744
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 6 cut(s) 6, 101, 206, 260, 270, 865
PspPI GGNCC 5 cut(s) 4, 26, 99, 505, 825
PsuI RGATCY 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
RseI CAYNNNNRTG 2 cut(s) 531, 806
Rsr2I CGGWCCG 1 cut(s) 26
RsrII CGGWCCG 1 cut(s) 26
SacI GAGCTC 1 cut(s) 239
SaqAI TTAA 6 cut(s) 513, 707, 737, 773, 945, 982
SatI GCNGC 6 cut(s) 199, 298, 524, 582, 608, 927
Sau3AI GATC 4 cut(s) 31, 75, 169, 258
Sau96I GGNCC 5 cut(s) 4, 26, 99, 505, 825
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 3 cut(s) 97, 164, 824
SduI GDGCHC 2 cut(s) 239, 859
SfaNI GCATC 3 cut(s) 682, 721, 826
SfuI TTCGAA 2 cut(s) 355, 376
SinI GGWCC 3 cut(s) 26, 99, 505
SmiMI CAYNNNNRTG 2 cut(s) 531, 806
Sse9I AATT 4 cut(s) 445, 591, 770, 946
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 7 cut(s) 43, 55, 116, 124, 160, 297, 671
SspMI CTAG 2 cut(s) 405, 476
SstI GAGCTC 1 cut(s) 239
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 95, 162, 822
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 5 cut(s) 362, 555, 686, 694, 904
TaiI ACGT 1 cut(s) 682
TaqI TCGA 5 cut(s) 168, 355, 376, 752, 806
TasI AATT 4 cut(s) 445, 591, 770, 946
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 3 cut(s) 191, 698, 754
Tru1I TTAA 6 cut(s) 513, 707, 737, 773, 945, 982
Tru9I TTAA 6 cut(s) 513, 707, 737, 773, 945, 982
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 2 cut(s) 391, 680
TseI GCWGC 5 cut(s) 198, 523, 581, 607, 926
Tsp45I GTSAC 2 cut(s) 391, 680
TspDTI ATGAA 3 cut(s) 672, 729, 824
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 3 cut(s) 26, 99, 505
XapI RAATTY 1 cut(s) 591
XceI RCATGY 1 cut(s) 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 2 cut(s) 405, 476
Zsp2I ATGCAT 1 cut(s) 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.