Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015520.1

Orthogroup ID

OG0019786

Physical Location & Seq

Genomic Coordinates Forward (+)

888 .. 1262

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015520.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgatcctcccctcctacctcccctggtccccgaccccaaacgcggagttacgctcctgcgaggcctacttcggcaacggcttcacccgccgggtcaatctcctgaagcccactaaagattccggcagctggttccggtgcgcgttcagcgagaccctgaggagctcggtgtgcgagggacggaggatccggatggtgccggggagggtgaagatgccgattggcggcgaggttttggaggatgtgattgggagaggggaggaggaggaggaggagttgcctgagcttcgcaacggtgcgttcgcaacggtgcgtttgagtttcgaaacggtgcgtttggattcttcgtttctgcatatttggttccttgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

124

Amino Acids

14.14

Weight (kDa)

5.9

Isoelectric Point (pI)

74.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019786)

Species	Orthologous Gene IDs
malus_domestica	MD11G1206800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079391
rosa_multiflora	Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003150
rosa_rugosa	Rorug05G0467800
rosa_samantha	Rh5AG521200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	2 cut(s)	44, 143
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	3 cut(s)	44, 88, 225
AclWI	GGATC	2 cut(s)	181, 194
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	43, 129, 224
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	129, 165, 286
AluI	AGCT	3 cut(s)	129, 165, 286
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	181, 194
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	92, 201
AsuHPI	GGTGA	2 cut(s)	76, 220
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	27
AxyI	CCTNAGG	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	92, 201
BcoDI	GTCTC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	127, 226
BlsI	GCNGC	2 cut(s)	128, 227
Bme1390I	CCNGG	3 cut(s)	25, 92, 201
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	5 cut(s)	29, 134, 188, 198, 365
BmrFI	CCNGG	3 cut(s)	25, 92, 201
BmsI	GCATC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	92, 201
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	23, 200
BsaWI	WCCGGW	2 cut(s)	135, 189
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 129, 224
Bse21I	CCTNAGG	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	23, 200
BseGI	GGATG	2 cut(s)	198, 247
BseLI	CCNNNNNNNGG	3 cut(s)	43, 129, 224
BseMII	CTCAG	2 cut(s)	149, 273
BseRI	GAGGAG	6 cut(s)	175, 275, 278, 281, 284, 287
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	44, 143
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	91, 123, 136, 190, 200
BslFI	GGGAC	2 cut(s)	13, 192
BslI	CCNNNNNNNGG	3 cut(s)	43, 129, 224
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	13, 192
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	3, 186
BspACI	CCGC	3 cut(s)	44, 88, 225
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	150, 274
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	2 cut(s)	44, 143
BspLI	GGNNCC	5 cut(s)	29, 134, 188, 198, 365
BspPI	GGATC	2 cut(s)	181, 194
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	23, 200
BssMI	GATC	2 cut(s)	3, 186
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	296, 310, 331
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	158, 282
BstF5I	GGATG	2 cut(s)	198, 247
BstFNI	CGCG	2 cut(s)	44, 143
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	6, 189
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	3, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 147, 171
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	23, 90, 199
BstUI	CGCG	2 cut(s)	44, 143
BstV1I	GCAGC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	198, 247
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	27
CviJI	RGCY	6 cut(s)	65, 81, 109, 129, 165, 286
CviKI_1	RGCY	6 cut(s)	65, 81, 109, 129, 165, 286
DdeI	CTNAG	2 cut(s)	158, 282
DpnI	GATC	2 cut(s)	5, 188
DpnII	GATC	2 cut(s)	3, 186
Ecl136II	GAGCTC	1 cut(s)	165
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	125
Eco81I	CCTNAGG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	167
FaiI	YATR	1 cut(s)	357
FaqI	GGGAC	2 cut(s)	13, 192
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	2 cut(s)	127, 226
FokI	GGATG	2 cut(s)	205, 254
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	127, 226
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	127, 226
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	5 cut(s)	91, 123, 136, 190, 200
HhaI	GCGC	1 cut(s)	143
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	119, 341
HpaII	CCGG	5 cut(s)	91, 123, 136, 190, 200
HphI	GGTGA	2 cut(s)	76, 220
Hpy188III	TCNNGA	2 cut(s)	103, 190
HpyCH4III	ACNGT	3 cut(s)	296, 310, 331
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 147, 171
HpyF3I	CTNAG	2 cut(s)	158, 282
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	3, 186
LmnI	GCTCC	2 cut(s)	59, 162
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	5, 188
MboI	GATC	2 cut(s)	3, 186
MboII	GAAGA	2 cut(s)	223, 336
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	5 cut(s)	91, 123, 136, 190, 200
MspR9I	CCNGG	3 cut(s)	25, 92, 201
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	2 cut(s)	44, 143
MwoI	GCNNNNNNNGC	3 cut(s)	87, 147, 171
NciI	CCSGG	2 cut(s)	92, 201
NdeII	GATC	2 cut(s)	3, 186
NlaIV	GGNNCC	5 cut(s)	29, 134, 188, 198, 365
NspV	TTCGAA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	119, 341
PkrI	GCNGC	2 cut(s)	128, 227
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	5 cut(s)	29, 134, 188, 198, 365
PspPI	GGNCC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	2 cut(s)	127, 226
Sau3AI	GATC	2 cut(s)	3, 186
Sau96I	GGNCC	1 cut(s)	27
ScrFI	CCNGG	3 cut(s)	25, 92, 201
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	21, 131, 167, 234, 288
SfaNI	GCATC	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	3 cut(s)	44, 88, 225
SstI	GAGCTC	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	23, 90, 199
TaaI	ACNGT	3 cut(s)	296, 310, 331
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	119, 341
TseI	GCWGC	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.