Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0019786

Physical Location & Seq

Genomic Coordinates Reverse (-)

89416233 .. 89418429

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG521200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTGCCGGAAGATCTAGCTTTCACGGTTTTTATCCCATCGGAGAAAGCTTTCAAGCGGGACCTGAGGCTGGACCTGACTGATAGTTTTGTTGGGGAGAAGATGATTGATACGTATGTAGTGGTTTCTAGAGTGCTGGGCTTCTCCGCCATGCCCCGGAGTATTGCTTCGGAAACAGTGGCATTTGGGAAGGAGATTTCATATGATTCGAATGGCTCTCATCATCGGCACCGGCGGCCACGGCGCTGCTCTCCACTCCGTCGAGAATGTATGATTTCTGACGGTGACACTCGTTTGGATTTTGATGAGAGATTATCAAACCCCCCACACATATACCGCTTCTTAAAGCCATGGCTGATCCTCCCCTCCTACCTCCCCTGGTCCCCGACCCCAAGCGGGGAGTTCCGCTCCTGCGAGGCCTACTTCGGCAACGGCTTCACCCGCCGGGTCGATCTCCTGAAGCCCACTAAAGATTCCGGCAGCTGGTTCCGGTGCGCATTCAGCGAGACCCTGAGGAGGAGTTGCCTGAGTTTCGAAACGACACAATTGGAAGAAACATGGAAAGCGTTGTTCTCTAGCCTTAGATATGCGAAAAGCTTTAGTGGTCCAGTTTGTTTTCGTCATGCTATTATTTCACCTCTTGGATATGAGACTGCATGGCTCACTGAAGATATAAAGTGTGAGGGAGCTTCTGCACCAGAAGCTTTGGCAGCACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005797 GO:0006464 GO:0006486 GO:0006487 GO:0006605 GO:0006612 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016740 GO:0016757 GO:0016763 GO:0019538 GO:0031090 GO:0031204 GO:0031984 GO:0031985 GO:0033036 GO:0033365 GO:0034613 GO:0034645 GO:0035252 GO:0036211 GO:0042285 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0050513 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070085 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

DUF563

Protein Analysis

239

Amino Acids

27.27

Weight (kDa)

8.15

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019786)

Species	Orthologous Gene IDs
malus_domestica	MD11G1206800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079391
rosa_multiflora	Rmu_sc0015520.1_g000001 Rmu_sc0025026.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003150
rosa_rugosa	Rorug05G0467800
rosa_samantha	Rh5AG521200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	228
AccBSI	CCGCTC	1 cut(s)	408
AciI	CCGC	7 cut(s)	58, 147, 235, 337, 396, 406, 442
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	479, 687
AfiI	CCNNNNNNNGG	6 cut(s)	70, 156, 396, 397, 483, 516
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	6 cut(s)	20, 50, 483, 597, 689, 704
AluI	AGCT	6 cut(s)	20, 50, 483, 597, 689, 704
Alw26I	GTCTC	2 cut(s)	500, 644
AlwI	GGATC	1 cut(s)	352
AoxI	GGCC	2 cut(s)	236, 417
ApeKI	GCWGC	3 cut(s)	246, 480, 710
Asp700I	GAANNNNTTC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	246, 497
AspS9I	GGNCC	4 cut(s)	61, 73, 381, 605
AsuC2I	CCSGG	2 cut(s)	157, 446
AsuHPI	GGTGA	3 cut(s)	296, 430, 627
AsuII	TTCGAA	2 cut(s)	209, 534
AvaII	GGWCC	4 cut(s)	61, 73, 381, 605
AxyI	CCTNAGG	2 cut(s)	65, 512
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BanI	GGYRCC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	233, 492
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	2 cut(s)	257, 448
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	157, 446
BcoDI	GTCTC	2 cut(s)	500, 644
BfaI	CTAG	3 cut(s)	17, 129, 576
BfoI	RGCGCY	1 cut(s)	247
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	4 cut(s)	236, 247, 481, 711
BlsI	GCNGC	4 cut(s)	237, 248, 482, 712
Bme1390I	CCNGG	3 cut(s)	157, 379, 446
Bme18I	GGWCC	4 cut(s)	61, 73, 381, 605
BmgT120I	GGNCC	4 cut(s)	61, 73, 381, 605
BmiI	GGNNCC	4 cut(s)	62, 230, 383, 488
BmrFI	CCNGG	3 cut(s)	157, 379, 446
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu14I	TTCGAA	2 cut(s)	209, 534
BpuMI	CCSGG	2 cut(s)	157, 446
BsaAI	YACGTR	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	4 cut(s)	155, 239, 350, 377
BsaWI	WCCGGW	1 cut(s)	489
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 156, 396, 397, 483, 516
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	2 cut(s)	65, 512
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	4 cut(s)	155, 239, 350, 377
BseLI	CCNNNNNNNGG	6 cut(s)	70, 156, 396, 397, 483, 516
BseMII	CTCAG	3 cut(s)	56, 503, 518
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	529, 532
BseXI	GCAGC	2 cut(s)	233, 492
BseYI	CCCAGC	1 cut(s)	136
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	238, 419
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	6 cut(s)	8, 157, 232, 445, 477, 490
BslFI	GGGAC	2 cut(s)	74, 367
BslI	CCNNNNNNNGG	6 cut(s)	70, 156, 396, 397, 483, 516
BsmAI	GTCTC	2 cut(s)	500, 644
BsmFI	GGGAC	2 cut(s)	74, 367
BsmI	GAATGC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	238, 419
Bso31I	GGTCTC	1 cut(s)	500
Bsp119I	TTCGAA	2 cut(s)	209, 534
Bsp143I	GATC	3 cut(s)	13, 357, 451
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	7 cut(s)	58, 147, 235, 337, 396, 406, 442
BspANI	GGCC	2 cut(s)	238, 419
BspCNI	CTCAG	3 cut(s)	57, 504, 519
BspLI	GGNNCC	4 cut(s)	62, 230, 383, 488
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	2 cut(s)	209, 534
BspT107I	GGYRCC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	4 cut(s)	155, 239, 350, 377
BssMI	GATC	3 cut(s)	13, 357, 451
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	3 cut(s)	28, 178, 284
BstBAI	YACGTR	1 cut(s)	114
BstBI	TTCGAA	2 cut(s)	209, 534
BstDEI	CTNAG	4 cut(s)	65, 512, 527, 581
BstDSI	CCRYGG	2 cut(s)	239, 350
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	2 cut(s)	246, 497
BstKTI	GATC	3 cut(s)	16, 360, 454
BstMAI	GTCTC	2 cut(s)	500, 644
BstMBI	GATC	3 cut(s)	13, 357, 451
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 241, 441, 501, 701, 710
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	155, 377, 444
BstSNI	TACGTA	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	233, 492
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Bsu36I	CCTNAGG	2 cut(s)	65, 512
BsuRI	GGCC	2 cut(s)	238, 419
BtgI	CCRYGG	2 cut(s)	239, 350
BtsIMutI	CAGTG	2 cut(s)	183, 663
CfoI	GCGC	2 cut(s)	246, 497
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	4 cut(s)	61, 73, 381, 605
CviAII	CATG	5 cut(s)	151, 351, 558, 623, 657
DdeI	CTNAG	4 cut(s)	65, 512, 527, 581
DpnI	GATC	3 cut(s)	15, 359, 453
DpnII	GATC	3 cut(s)	13, 357, 451
EaeI	YGGCCR	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	136
Eco105I	TACGTA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	4 cut(s)	61, 73, 381, 605
Eco57I	CTGAAG	2 cut(s)	479, 687
Eco81I	CCTNAGG	2 cut(s)	65, 512
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	5 cut(s)	154, 354, 561, 626, 660
FaqI	GGGAC	2 cut(s)	74, 367
FatI	CATG	5 cut(s)	150, 350, 557, 622, 656
FauI	CCCGC	3 cut(s)	51, 389, 449
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	236, 247, 481, 711
Fsp4HI	GCNGC	4 cut(s)	236, 247, 481, 711
FspAI	RTGCGCAY	1 cut(s)	496
FspBI	CTAG	3 cut(s)	17, 129, 576
FspI	TGCGCA	1 cut(s)	496
GlaI	GCGC	2 cut(s)	245, 496
GluI	GCNGC	4 cut(s)	236, 247, 481, 711
GsaI	CCCAGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	238, 419
HapII	CCGG	6 cut(s)	8, 157, 232, 445, 477, 490
HhaI	GCGC	2 cut(s)	246, 497
Hin1II	CATG	5 cut(s)	154, 354, 561, 626, 660
Hin6I	GCGC	2 cut(s)	244, 495
HinP1I	GCGC	2 cut(s)	244, 495
HindIII	AAGCTT	3 cut(s)	48, 595, 702
HinfI	GANTC	2 cut(s)	206, 473
HpaII	CCGG	6 cut(s)	8, 157, 232, 445, 477, 490
HphI	GGTGA	3 cut(s)	296, 430, 627
Hpy188I	TCNGA	3 cut(s)	43, 172, 280
Hpy188III	TCNNGA	3 cut(s)	129, 263, 457
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	28, 178, 284
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	656, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 241, 441, 501, 701, 710
HpyF3I	CTNAG	4 cut(s)	65, 512, 527, 581
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	154, 354, 561, 626, 660
HspAI	GCGC	2 cut(s)	244, 495
Kzo9I	GATC	3 cut(s)	13, 357, 451
LmnI	GCTCC	2 cut(s)	413, 686
Lsp1109I	GCAGC	2 cut(s)	233, 492
MaeI	CTAG	3 cut(s)	17, 129, 576
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	3 cut(s)	15, 359, 453
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	3 cut(s)	13, 357, 451
MboII	GAAGA	4 cut(s)	23, 112, 563, 680
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	1 cut(s)	545
MnlI	CCTC	9 cut(s)	60, 371, 376, 383, 409, 507, 510, 648, 676
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	483
MspI	CCGG	6 cut(s)	8, 157, 232, 445, 477, 490
MspR9I	CCNGG	3 cut(s)	157, 379, 446
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	6 cut(s)	235, 241, 441, 501, 701, 710
NciI	CCSGG	2 cut(s)	157, 446
NcoI	CCATGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	13, 357, 451
NlaIII	CATG	5 cut(s)	154, 354, 561, 626, 660
NlaIV	GGNNCC	4 cut(s)	62, 230, 383, 488
NmuCI	GTSAC	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	496
NspV	TTCGAA	2 cut(s)	209, 534
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	206, 473
PkrI	GCNGC	4 cut(s)	237, 248, 482, 712
Ppu21I	YACGTR	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	4 cut(s)	62, 230, 383, 488
PspPI	GGNCC	4 cut(s)	61, 73, 381, 605
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	4 cut(s)	236, 247, 481, 711
Sau3AI	GATC	3 cut(s)	13, 357, 451
Sau96I	GGNCC	4 cut(s)	61, 73, 381, 605
ScrFI	CCNGG	3 cut(s)	157, 379, 446
SfuI	TTCGAA	2 cut(s)	209, 534
SgrAI	CRCCGGYG	1 cut(s)	231
SinI	GGWCC	4 cut(s)	61, 73, 381, 605
SnaBI	TACGTA	1 cut(s)	114
Sse9I	AATT	1 cut(s)	545
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	7 cut(s)	58, 147, 235, 337, 396, 406, 442
SspMI	CTAG	3 cut(s)	17, 129, 576
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	155, 377, 444
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	3 cut(s)	28, 178, 284
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	209, 262, 450, 534
TasI	AATT	1 cut(s)	545
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	206, 473
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	2 cut(s)	183, 670
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	3 cut(s)	246, 480, 710
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	183, 670
VpaK11BI	GGWCC	4 cut(s)	61, 73, 381, 605
XbaI	TCTAGA	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	3 cut(s)	17, 129, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.