Rorug05G0467800

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
64429003 .. 64434448
5446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0467800.1

Sequence Viewer

Length: 2013 bp
ATGGATATAGGAAAATTGCAACAAAATGTACGTCATCTGACTCATGTCTTTGAAGAGGCCTTCTTAGAGCAGAGAAGAGTCTTTTCAAAATCCAAAGCTCAAATAGATGAACTTAAGAAAAAGCTTGAGCAGACAAGATGCCAACAGAAAGAGCTCGAGGAAAAACTTGAGAAGAGTGAAGCTCAAAATGAAGATCTTCAGAAGAAGCATGATCACAGTGAAGCTCAGAGGAAAGAACTTATGAAAAGGCATGAAAAGAGTGAAGCGAATAAGAAAGAGCTCCGGAAAAAGATTGTGCATAGTGAAGCTGATATGAAAGCGCTTCTGAAAAAGCTTGAGTATATTGAGGCTCAGAAAAAGAAGCATGAGAGAACTGAAAAAGCTCAAAAGGAAGAACTTGATAAAAAATTGCTTCAGCAGAGTGAGACTCAAAAAAAGAAATTGCAACTTATGTTCAGCTTGGATGATAATAAGGCTATTAAAAAGCTGTTCGAGGAAAAGAAAAAGAATGAGAAGCTTGATGGGGAATTGAATGAGTTGCGCAACCATCATAATCTCCTGCTTGAACTAAAGGATGCTGTTCTGAATAAGTTAAAGAAGAAGGAAGAAGAGTTGATCAATGTACGTTACCTTCTTGAACAGACCTTCTTAGAGAAAGAAGCCTTTTTAAAATCTGAAGCTCTAAAGAATGATCTTAAGAAAACGCTAGGGGAAAGTGAATCTGAAAGAAATGAACTTCAAAAAAAGCATGATCATTGTGAAGCTCAGAAGAAAGATCTTCTGAAAAAGGATGATCAGATTGAAGCCGAACTTCAGGAGGCTCGTCAAGAGTTCATCAATGGACTAGGGGGATTAAACTTCTGTACTGCAATTGGCGTGAAGAGAATGGGAGAGCTTGACAACAAACCATTTCAAACTTCATGCAAGAGACAATATTCTAAAAAAGAAGCAGATGACAAGGCAGCAACACTATATTCTCAGTGGGAGGGCTACCTCAGGGATCCAAATTGGTATCCATTCACAACTAGCATGGATTCTTGTGGAAATTCTAAGCAAACTATCAACGAAGGAGATGAAAAATTGAAACAGTTAAAGGTCTGCAATCTTGATATCGAAGTATACAAGGCTGTGACAACTGCCTTGGTGGAATTGAATAGCTATAATACCAATGGTAGGACTCCAATAGCAGAATTATGGAATTTTAAAGAAGGGAGGAAGGCAACAGTGAAAGAGGGAATATCGTATGTACTGAACCAATTGAAACTGCTGAGAAAGAGGGTTGGTAAAATGTTGTCAGAACAAAAGCAGCTTGATATGAAGAAGAAAAAACCGGATGATGGGACTAATGAAATTCAAAAGAAGTTAGAGGAGAAGGAAGCTGAGTTGAAAGATTTAAAAGCTGAGTTAGAATATTCAGAAGAGCTCAACTCTACACTATTTGTCAAGGAGCGTGAAAGTAACGATGAACTGCAGGATGCTCGCAAGGAGTTAATCAGGGAACTGGTGGATGGCGGTTTTATTGGCGTGAAGAGAATGGGAGAGCTTGACCTCACCCCTTTTGCAACTGCATGCAAGAGAGATAATTCTATGCTAGAACCAGAGGTGTGGCAGGATTGTATTAGTGATCCAAGCTGGTATCCTTTTAAACCGATCGAGGATGAATTTGGAAATCGGAAGGAAATTCTTGATGTAGAAGATGAAAAATTGAAGAGTATAAAGGGCAACGATGGAGTGTACAAGGCAGTTGTGACTGCCTTGATGGAACTGAAGGACTACAATTCGAGTGAAGCACGAAAATTGCAACAAGCTGCAAGTGAGATGAAGATGTTGTTAGAGGATCGAGAGATACCCGAAACAGAAGTGGAAGTTCGAAAGAAACATCTTGAGCTGCTTATGCAACAACATTGCCAACAAATAGTTGAGAGGGCACGTGAAGAGGGCCTGCGGTTGAAAAAAGAAGCAGAGAAACTCGAGGGAAAATGTAATGCTATATCTGGAAAAAAAGAAGACTGA

Protein Analysis

670

Amino Acids

78.34

Weight (kDa)

6.74

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XH PF03469 294 - 425 8.3e-45 XH domain
XH PF03469 510 - 598 4.2e-19 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
AccI GTMKAC 1 cut(s) 1119
AccIII TCCGGA 1 cut(s) 282
AciI CCGC 2 cut(s) 1512, 1945
AclWI GGATC 4 cut(s) 995, 1008, 1619, 1845
AcsI RAATTY 5 cut(s) 1045, 1198, 1350, 1661, 1680
AcuI CTGAAG 5 cut(s) 182, 398, 696, 797, 1787
AcvI CACGTG 1 cut(s) 1931
AfaI GTAC 5 cut(s) 30, 624, 865, 1248, 1736
AfeI AGCGCT 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 1173, 1337
AflII CTTAAG 2 cut(s) 113, 695
Alw21I GWGCWC 3 cut(s) 156, 282, 1425
Alw26I GTCTC 2 cut(s) 419, 922
AlwI GGATC 4 cut(s) 995, 1008, 1619, 1845
Ama87I CYCGRG 2 cut(s) 155, 1970
Aor13HI TCCGGA 1 cut(s) 282
Aor51HI AGCGCT 1 cut(s) 321
AoxI GGCC 2 cut(s) 57, 1939
ApeKI GCWGC 4 cut(s) 962, 1306, 1808, 1888
ApoI RAATTY 5 cut(s) 1045, 1198, 1350, 1661, 1680
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 322, 543
AspS9I GGNCC 1 cut(s) 1939
AsuHPI GGTGA 1 cut(s) 1543
AsuII TTCGAA 1 cut(s) 1870
AvaI CYCGRG 2 cut(s) 155, 1970
AxyI CCTNAGG 1 cut(s) 995
BaeGI GKGCMC 1 cut(s) 1930
BamHI GGATCC 1 cut(s) 1000
BanII GRGCYC 3 cut(s) 156, 282, 1425
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbrPI CACGTG 1 cut(s) 1931
Bbv12I GWGCWC 3 cut(s) 156, 282, 1425
BbvI GCAGC 4 cut(s) 974, 1318, 1795, 1875
BccI CCATC 6 cut(s) 515, 555, 1331, 1502, 1721, 1753
BcgI CGANNNNNNTGC 2 cut(s) 1460, 1494
BciVI GTATCC 2 cut(s) 1023, 1647
BclI TGATCA 4 cut(s) 211, 615, 751, 793
BcoDI GTCTC 2 cut(s) 419, 922
BfaI CTAG 4 cut(s) 707, 845, 1026, 1592
BfmI CTRYAG 1 cut(s) 1469
BfoI RGCGCY 1 cut(s) 323
BfrI CTTAAG 2 cut(s) 113, 695
BfuI GTATCC 2 cut(s) 1023, 1647
BglII AGATCT 2 cut(s) 193, 775
BisI GCNGC 4 cut(s) 963, 1307, 1809, 1889
BlsI GCNGC 4 cut(s) 964, 1308, 1810, 1890
BmeT110I CYCGRG 2 cut(s) 155, 1970
BmgT120I GGNCC 1 cut(s) 1939
BmiI GGNNCC 1 cut(s) 1002
BmsI GCATC 3 cut(s) 128, 565, 1465
BoxI GACNNNNGTC 1 cut(s) 44
BplI GAGNNNNNCTC 6 cut(s) 166, 198, 412, 444, 1412, 1444
Bpu14I TTCGAA 1 cut(s) 1870
BpuEI CTTGAG 4 cut(s) 146, 188, 356, 1904
BsaAI YACGTR 1 cut(s) 1931
BsaJI CCNNGG 1 cut(s) 1140
BsaWI WCCGGW 2 cut(s) 282, 1330
Bsc4I CCNNNNNNNGG 2 cut(s) 1173, 1337
Bse1I ACTGG 1 cut(s) 1506
Bse21I CCTNAGG 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 1903
BseAI TCCGGA 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 1140
BseGI GGATG 7 cut(s) 469, 580, 796, 1339, 1480, 1513, 1663
BseLI CCNNNNNNNGG 2 cut(s) 1173, 1337
BseMI GCAATG 1 cut(s) 1903
BseMII CTCAG 8 cut(s) 239, 365, 779, 992, 1009, 1259, 1371, 1392
BseNI ACTGG 1 cut(s) 1506
BseRI GAGGAG 1 cut(s) 1382
BseSI GKGCMC 1 cut(s) 1930
BseXI GCAGC 4 cut(s) 974, 1318, 1795, 1875
Bsh1285I CGRYCG 1 cut(s) 1653
BshFI GGCC 2 cut(s) 59, 1941
BsiEI CGRYCG 1 cut(s) 1653
BsiHKAI GWGCWC 3 cut(s) 156, 282, 1425
BsiHKCI CYCGRG 2 cut(s) 155, 1970
BsiSI CCGG 2 cut(s) 283, 1331
BslFI GGGAC 1 cut(s) 1354
BslI CCNNNNNNNGG 2 cut(s) 1173, 1337
BsmAI GTCTC 2 cut(s) 419, 922
BsmFI GGGAC 1 cut(s) 1354
BsnI GGCC 2 cut(s) 59, 1941
BsoBI CYCGRG 2 cut(s) 155, 1970
Bsp119I TTCGAA 1 cut(s) 1870
Bsp1286I GDGCHC 4 cut(s) 156, 282, 1425, 1930
Bsp13I TCCGGA 1 cut(s) 282
Bsp1407I TGTACA 1 cut(s) 1734
BspACI CCGC 2 cut(s) 1512, 1945
BspANI GGCC 2 cut(s) 59, 1941
BspCNI CTCAG 8 cut(s) 238, 364, 778, 991, 1008, 1260, 1372, 1393
BspEI TCCGGA 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 1002
BspMAI CTGCAG 1 cut(s) 1473
BspPI GGATC 4 cut(s) 995, 1008, 1619, 1845
BspQI GCTCTTC 1 cut(s) 1413
BspT104I TTCGAA 1 cut(s) 1870
BspTI CTTAAG 2 cut(s) 113, 695
BsrDI GCAATG 1 cut(s) 1903
BsrGI TGTACA 1 cut(s) 1734
BsrI ACTGG 1 cut(s) 1506
BssECI CCNNGG 1 cut(s) 1140
BssNAI GTATAC 1 cut(s) 1120
BssT1I CCWWGG 1 cut(s) 1140
Bst1107I GTATAC 1 cut(s) 1120
Bst4CI ACNGT 3 cut(s) 218, 1089, 1225
Bst6I CTCTTC 9 cut(s) 48, 70, 167, 603, 875, 1413, 1523, 1703, 1929
BstAFI CTTAAG 2 cut(s) 113, 695
BstAUI TGTACA 1 cut(s) 1734
BstBAI YACGTR 1 cut(s) 1931
BstBI TTCGAA 1 cut(s) 1870
BstC8I GCNNGC 3 cut(s) 1480, 1570, 1943
BstF5I GGATG 7 cut(s) 469, 580, 796, 1339, 1480, 1513, 1663
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 2 cut(s) 322, 543
BstMAI GTCTC 2 cut(s) 419, 922
BstMCI CGRYCG 1 cut(s) 1653
BstMWI GCNNNNNNNGC 1 cut(s) 1894
BstNSI RCATGY 1 cut(s) 1572
BstPAI GACNNNNGTC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 1469
BstSLI GKGCMC 1 cut(s) 1930
BstV1I GCAGC 4 cut(s) 974, 1318, 1795, 1875
BstX2I RGATCY 3 cut(s) 193, 775, 1000
BstXI CCANNNNNNTGG 1 cut(s) 1605
BstYI RGATCY 3 cut(s) 193, 775, 1000
BstZ17I GTATAC 1 cut(s) 1120
Bsu36I CCTNAGG 1 cut(s) 995
BsuI GTATCC 2 cut(s) 1023, 1647
BsuRI GGCC 2 cut(s) 59, 1941
BtsCI GGATG 7 cut(s) 469, 580, 796, 1339, 1480, 1513, 1663
BtsIMutI CAGTG 3 cut(s) 223, 986, 1230
Cac8I GCNNGC 3 cut(s) 1480, 1570, 1943
CfoI GCGC 2 cut(s) 322, 543
Cfr13I GGNCC 1 cut(s) 1939
Csp6I GTAC 5 cut(s) 29, 623, 864, 1247, 1735
CviAII CATG 8 cut(s) 44, 209, 251, 365, 749, 921, 1030, 1569
CviQI GTAC 5 cut(s) 29, 623, 864, 1247, 1735
DraI TTTAAA 4 cut(s) 669, 1204, 1395, 1645
Eam1104I CTCTTC 9 cut(s) 48, 70, 167, 603, 875, 1413, 1523, 1703, 1929
EarI CTCTTC 9 cut(s) 48, 70, 167, 603, 875, 1413, 1523, 1703, 1929
Ecl136II GAGCTC 3 cut(s) 154, 280, 1423
Eco130I CCWWGG 1 cut(s) 1140
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 3 cut(s) 156, 282, 1425
Eco32I GATATC 1 cut(s) 1111
Eco47III AGCGCT 1 cut(s) 321
Eco53kI GAGCTC 3 cut(s) 154, 280, 1423
Eco57I CTGAAG 5 cut(s) 182, 398, 696, 797, 1787
Eco72I CACGTG 1 cut(s) 1931
Eco81I CCTNAGG 1 cut(s) 995
Eco88I CYCGRG 2 cut(s) 155, 1970
EcoICRI GAGCTC 3 cut(s) 154, 280, 1423
EcoO109I RGGNCCY 1 cut(s) 1939
EcoRV GATATC 1 cut(s) 1111
EcoT14I CCWWGG 1 cut(s) 1140
EcoT38I GRGCYC 3 cut(s) 156, 282, 1425
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 1 cut(s) 1354
FatI CATG 8 cut(s) 43, 208, 250, 364, 748, 920, 1029, 1568
FbaI TGATCA 4 cut(s) 211, 615, 751, 793
FblI GTMKAC 1 cut(s) 1119
Fnu4HI GCNGC 4 cut(s) 963, 1307, 1809, 1889
FokI GGATG 7 cut(s) 476, 587, 803, 1346, 1487, 1520, 1670
FriOI GRGCYC 3 cut(s) 156, 282, 1425
Fsp4HI GCNGC 4 cut(s) 963, 1307, 1809, 1889
FspBI CTAG 4 cut(s) 707, 845, 1026, 1592
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 2 cut(s) 321, 542
GluI GCNGC 4 cut(s) 963, 1307, 1809, 1889
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 2 cut(s) 59, 1941
HapII CCGG 2 cut(s) 283, 1331
HhaI GCGC 2 cut(s) 322, 543
Hin1II CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
Hin6I GCGC 2 cut(s) 320, 541
HinP1I GCGC 2 cut(s) 320, 541
HindIII AAGCTT 3 cut(s) 122, 332, 515
HinfI GANTC 6 cut(s) 40, 78, 427, 719, 1034, 1177
HpaII CCGG 2 cut(s) 283, 1331
HphI GGTGA 1 cut(s) 1543
Hpy166II GTNNAC 2 cut(s) 1120, 1735
Hpy188III TCNNGA 9 cut(s) 283, 635, 815, 827, 1106, 1685, 1841, 1883, 1995
Hpy8I GTNNAC 2 cut(s) 1120, 1735
HpyCH4III ACNGT 3 cut(s) 218, 1089, 1225
HpyCH4IV ACGT 3 cut(s) 31, 625, 1930
HpyF10VI GCNNNNNNNGC 1 cut(s) 1894
HpySE526I ACGT 3 cut(s) 31, 625, 1930
Hsp92II CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
HspAI GCGC 2 cut(s) 320, 541
Kpn2I TCCGGA 1 cut(s) 282
Ksp22I TGATCA 4 cut(s) 211, 615, 751, 793
LguI GCTCTTC 1 cut(s) 1413
LmnI GCTCC 2 cut(s) 285, 1447
Lsp1109I GCAGC 4 cut(s) 974, 1318, 1795, 1875
LweI GCATC 3 cut(s) 128, 565, 1465
MaeI CTAG 4 cut(s) 707, 845, 1026, 1592
MaeII ACGT 3 cut(s) 31, 625, 1930
MaeIII GTNAC 4 cut(s) 626, 1129, 1457, 1747
MfeI CAATTG 2 cut(s) 870, 1256
MflI RGATCY 3 cut(s) 193, 775, 1000
MhlI GDGCHC 4 cut(s) 156, 282, 1425, 1930
MlyI GAGTC 4 cut(s) 34, 87, 421, 1171
MroI TCCGGA 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 195
MspCI CTTAAG 2 cut(s) 113, 695
MspI CCGG 2 cut(s) 283, 1331
MunI CAATTG 2 cut(s) 870, 1256
MwoI GCNNNNNNNGC 1 cut(s) 1894
NlaIII CATG 8 cut(s) 47, 212, 254, 368, 752, 924, 1033, 1572
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 2 cut(s) 1129, 1747
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 1 cut(s) 1572
NspV TTCGAA 1 cut(s) 1870
PaeI GCATGC 1 cut(s) 1572
PaeR7I CTCGAG 2 cut(s) 155, 1970
PceI AGGCCT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 1413
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 719, 1034
PkrI GCNGC 4 cut(s) 964, 1308, 1810, 1890
Ple19I CGATCG 1 cut(s) 1653
PleI GAGTC 4 cut(s) 34, 86, 421, 1171
PmaCI CACGTG 1 cut(s) 1931
PmlI CACGTG 1 cut(s) 1931
PpsI GAGTC 4 cut(s) 34, 86, 421, 1171
Ppu21I YACGTR 1 cut(s) 1931
PshAI GACNNNNGTC 1 cut(s) 44
Psp124BI GAGCTC 3 cut(s) 156, 282, 1425
PspCI CACGTG 1 cut(s) 1931
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 1 cut(s) 1939
PspXI VCTCGAGB 2 cut(s) 155, 1970
PstI CTGCAG 1 cut(s) 1473
PsuI RGATCY 3 cut(s) 193, 775, 1000
PvuI CGATCG 1 cut(s) 1653
RsaI GTAC 5 cut(s) 30, 624, 865, 1248, 1736
RsaNI GTAC 5 cut(s) 29, 623, 864, 1247, 1735
SacI GAGCTC 3 cut(s) 156, 282, 1425
SapI GCTCTTC 1 cut(s) 1413
SatI GCNGC 4 cut(s) 963, 1307, 1809, 1889
Sau96I GGNCC 1 cut(s) 1939
SchI GAGTC 4 cut(s) 34, 87, 421, 1171
SduI GDGCHC 4 cut(s) 156, 282, 1425, 1930
SfaNI GCATC 3 cut(s) 128, 565, 1465
SfcI CTRYAG 1 cut(s) 1469
Sfr274I CTCGAG 2 cut(s) 155, 1970
SfuI TTCGAA 1 cut(s) 1870
SlaI CTCGAG 2 cut(s) 155, 1970
SmlI CTYRAG 8 cut(s) 113, 125, 155, 167, 335, 695, 1883, 1970
SmoI CTYRAG 8 cut(s) 113, 125, 155, 167, 335, 695, 1883, 1970
SphI GCATGC 1 cut(s) 1572
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 2 cut(s) 1512, 1945
SspI AATATT 2 cut(s) 935, 1412
SspMI CTAG 4 cut(s) 707, 845, 1026, 1592
SstI GAGCTC 3 cut(s) 156, 282, 1425
StuI AGGCCT 1 cut(s) 59
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 3 cut(s) 218, 1089, 1225
TaiI ACGT 3 cut(s) 34, 628, 1933
TaqI TCGA 8 cut(s) 156, 492, 1113, 1653, 1781, 1840, 1870, 1971
TatI WGTACW 3 cut(s) 863, 1246, 1734
TfiI GAWTC 2 cut(s) 719, 1034
TscAI CASTG 3 cut(s) 223, 986, 1230
TseFI GTSAC 2 cut(s) 1129, 1747
TseI GCWGC 4 cut(s) 962, 1306, 1808, 1888
Tsp45I GTSAC 2 cut(s) 1129, 1747
TspRI CASTG 3 cut(s) 223, 986, 1230
Vha464I CTTAAG 2 cut(s) 113, 695
XapI RAATTY 5 cut(s) 1045, 1198, 1350, 1661, 1680
XceI RCATGY 1 cut(s) 1572
XhoI CTCGAG 2 cut(s) 155, 1970
XmiI GTMKAC 1 cut(s) 1119
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 4 cut(s) 707, 845, 1026, 1592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.