Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

24059177 .. 24059458

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1199200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGATTTTGCAGGCATGGACAAACGGTCGACTACATTCTCCATATCATAGAGTGATGATGAATGGAAATGAGGCTAGGTACTCAACTGGATTGTTCTCCATCCCAAAGGAAGGTTACATTATAGAAGCCCCGCAGGAGGCTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCTTTGATCACGTTGAATTTCTAGGGTTCTACTACACGGAGGCTGGCCAGAGAGCTCAGTATGCTTTCAAAACTTACTGTGGAGTCCAAGACTTGGCTTTGTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

94

Amino Acids

10.75

Weight (kDa)

5.43

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	110, 136, 265
AgsI	TTSAA	2 cut(s)	188, 241
AhdI	GACNNNNNGTC	1 cut(s)	24
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	2 cut(s)	156, 229
AoxI	GGCC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	156, 229
BccI	CCATC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	2 cut(s)	75, 194
BmeRI	GACNNNNNGTC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 136, 265
Bse1I	ACTGG	1 cut(s)	91
BseGI	GGATG	2 cut(s)	99, 151
BseLI	CCNNNNNNNGG	3 cut(s)	110, 136, 265
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	156, 229
BslI	CCNNNNNNNGG	3 cut(s)	110, 136, 265
BsnI	GGCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	156, 229
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	26, 251
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	12, 217
BstDEI	CTNAG	2 cut(s)	228, 279
BstF5I	GGATG	2 cut(s)	99, 151
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 169, 233, 275
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	99, 151
Cac8I	GCNNGC	2 cut(s)	12, 217
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	8 cut(s)	74, 128, 140, 172, 215, 219, 227, 269
CviKI_1	RGCY	8 cut(s)	74, 128, 140, 172, 215, 219, 227, 269
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	228, 279
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DriI	GACNNNNNGTC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	1 cut(s)	18
FaiI	YATR	6 cut(s)	16, 43, 48, 122, 234, 276
FatI	CATG	1 cut(s)	14
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	28
FokI	GGATG	2 cut(s)	86, 158
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	75, 194
HaeIII	GGCC	1 cut(s)	219
Hin1II	CATG	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	26, 251
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 169, 233, 275
HpyF3I	CTNAG	2 cut(s)	228, 279
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	72, 119, 201, 233
MaeI	CTAG	2 cut(s)	75, 194
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	156, 229
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	64, 130, 205
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	160, 169, 233, 275
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	156, 229
SetI	ASST	4 cut(s)	80, 115, 186, 229
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	75, 194
SstI	GAGCTC	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	26, 251
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	28
TasI	AATT	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	74, 162
TspGWI	ACGGA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	28
XspI	CTAG	2 cut(s)	75, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.