Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

3655142 .. 3656698

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGTCGAAGATTGAAGAGATCATCCAAAACGCACTCAAACAAGGGAGCTTTTCTATCTTCCTCTCTAAACCCAACCAAAATATAACAATGGGATCAGAAACACCTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCGGGCACCACCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTTTGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGACGTTCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCCATGGTGCCCCTATATGAGAGCATGGGTATTGAGGAAGCAACCGTCGATCGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAACCTACCTTCTTCGAGTTATGAAATATAAGGGCCCTCAAACCAGCGAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACCATTTTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTCAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCATTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGATAGCTCAATCTGCTTTGAAGACTTACTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

346

Amino Acids

39.48

Weight (kDa)

5.85

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	39 - 117	3.2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	199 - 291	5.4e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	875
AccB1I	GGYRCC	2 cut(s)	155, 364
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	802
AciI	CCGC	1 cut(s)	190
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	3 cut(s)	103, 513, 737
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	6 cut(s)	151, 165, 338, 720, 884, 910
AgsI	TTSAA	6 cut(s)	17, 269, 419, 695, 943, 1015
AhdI	GACNNNNNGTC	1 cut(s)	798
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	7 cut(s)	51, 182, 283, 502, 537, 634, 1001
AluI	AGCT	7 cut(s)	51, 182, 283, 502, 537, 634, 1001
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	3 cut(s)	103, 513, 737
AlwNI	CAGNNNCTG	1 cut(s)	989
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	440, 610, 637
ApaI	GGGCCC	1 cut(s)	614
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	610, 611, 637
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	661
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	183
BaeGI	GKGCMC	3 cut(s)	158, 369, 614
BanI	GGYRCC	2 cut(s)	155, 364
BanII	GRGCYC	2 cut(s)	184, 614
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbsI	GAAGAC	1 cut(s)	1022
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	1 cut(s)	713
BciT130I	CCWGG	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	3 cut(s)	701, 849, 1039
BfuAI	ACCTGC	1 cut(s)	875
Bme1390I	CCNGG	2 cut(s)	153, 557
BmeRI	GACNNNNNGTC	1 cut(s)	798
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	610, 611, 637
BmiI	GGNNCC	3 cut(s)	157, 366, 612
BmrFI	CCNGG	2 cut(s)	153, 557
BmsI	GCATC	1 cut(s)	937
BpiI	GAAGAC	1 cut(s)	1022
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	2 cut(s)	131, 566
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	836
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 165, 338, 720, 884, 910
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	24, 925, 928
BseLI	CCNNNNNNNGG	6 cut(s)	151, 165, 338, 720, 884, 910
BseMII	CTCAG	2 cut(s)	186, 489
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	3 cut(s)	158, 369, 614
BseYI	CCCAGC	1 cut(s)	634
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	3 cut(s)	442, 612, 639
BshNI	GGYRCC	2 cut(s)	155, 364
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	152, 749, 837
BslFI	GGGAC	2 cut(s)	182, 555
BslI	CCNNNNNNNGG	6 cut(s)	151, 165, 338, 720, 884, 910
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	182, 555
BsnI	GGCC	3 cut(s)	442, 612, 639
BsoBI	CYCGRG	1 cut(s)	183
Bsp119I	TTCGAA	1 cut(s)	253
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	4 cut(s)	158, 184, 369, 614
Bsp143I	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	3 cut(s)	442, 612, 639
BspCNI	CTCAG	2 cut(s)	185, 490
BspLI	GGNNCC	3 cut(s)	157, 366, 612
BspMI	ACCTGC	1 cut(s)	875
BspPI	GGATC	3 cut(s)	103, 513, 737
BspQI	GCTCTTC	2 cut(s)	273, 918
BspT104I	TTCGAA	1 cut(s)	253
BspT107I	GGYRCC	2 cut(s)	155, 364
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	3 cut(s)	403, 472, 1025
Bst6I	CTCTTC	4 cut(s)	12, 198, 273, 918
BstAPI	GCANNNNNTGC	1 cut(s)	934
BstBI	TTCGAA	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	172, 498, 630
BstDSI	CCRYGG	1 cut(s)	360
BstF5I	GGATG	3 cut(s)	24, 925, 928
BstKTI	GATC	6 cut(s)	24, 98, 409, 508, 732, 955
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	3 cut(s)	934, 943, 1007
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	151, 555
BstSLI	GKGCMC	3 cut(s)	158, 369, 614
BstV2I	GAAGAC	1 cut(s)	1022
BsuRI	GGCC	3 cut(s)	442, 612, 639
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	3 cut(s)	24, 925, 928
BveI	ACCTGC	1 cut(s)	875
CaiI	CAGNNNCTG	1 cut(s)	989
Cfr13I	GGNCC	3 cut(s)	610, 611, 637
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	7 cut(s)	136, 338, 361, 382, 766, 789, 956
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	3 cut(s)	172, 498, 630
DpnI	GATC	6 cut(s)	23, 97, 408, 507, 731, 954
DpnII	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
DraIII	CACNNNGTG	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	798
Eam1104I	CTCTTC	4 cut(s)	12, 198, 273, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	798
EarI	CTCTTC	4 cut(s)	12, 198, 273, 918
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	2 cut(s)	184, 614
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	182
EcoO109I	RGGNCCY	2 cut(s)	610, 611
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	790
EcoT38I	GRGCYC	2 cut(s)	184, 614
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	7 cut(s)	139, 341, 364, 385, 769, 792, 959
FaqI	GGGAC	2 cut(s)	182, 555
FatI	CATG	7 cut(s)	135, 337, 360, 381, 765, 788, 955
FblI	GTMKAC	1 cut(s)	802
FokI	GGATG	3 cut(s)	11, 915, 932
FriOI	GRGCYC	2 cut(s)	184, 614
FspBI	CTAG	3 cut(s)	701, 849, 1039
GsaI	CCCAGC	1 cut(s)	638
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	442, 612, 639
HapII	CCGG	3 cut(s)	152, 749, 837
Hin1II	CATG	7 cut(s)	139, 341, 364, 385, 769, 792, 959
HincII	GTYRAC	2 cut(s)	576, 803
HindII	GTYRAC	2 cut(s)	576, 803
HinfI	GANTC	5 cut(s)	5, 170, 186, 752, 776
HpaII	CCGG	3 cut(s)	152, 749, 837
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	2 cut(s)	576, 803
Hpy188I	TCNGA	6 cut(s)	100, 247, 487, 499, 985, 996
Hpy8I	GTNNAC	2 cut(s)	576, 803
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	5 cut(s)	252, 490, 596, 689, 753
HpyCH4III	ACNGT	3 cut(s)	403, 472, 1025
HpyCH4IV	ACGT	2 cut(s)	249, 318
HpyCH4V	TGCA	5 cut(s)	139, 197, 679, 709, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	934, 943, 1007
HpyF3I	CTNAG	3 cut(s)	172, 498, 630
HpySE526I	ACGT	2 cut(s)	249, 318
Hsp92II	CATG	7 cut(s)	139, 341, 364, 385, 769, 792, 959
Kzo9I	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
LguI	GCTCTTC	2 cut(s)	273, 918
LmnI	GCTCC	1 cut(s)	48
LweI	GCATC	1 cut(s)	937
MaeI	CTAG	3 cut(s)	701, 849, 1039
MaeII	ACGT	2 cut(s)	249, 318
MaeIII	GTNAC	2 cut(s)	667, 887
MalI	GATC	6 cut(s)	23, 97, 408, 507, 731, 954
MboI	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
MboII	GAAGA	8 cut(s)	22, 29, 52, 215, 290, 581, 935, 1027
MhlI	GDGCHC	4 cut(s)	158, 184, 369, 614
MluCI	AATT	3 cut(s)	308, 457, 510
MlyI	GAGTC	4 cut(s)	14, 164, 195, 761
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	3 cut(s)	152, 749, 837
MspR9I	CCNGG	2 cut(s)	153, 557
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	3 cut(s)	934, 943, 1007
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
NlaIII	CATG	7 cut(s)	139, 341, 364, 385, 769, 792, 959
NlaIV	GGNNCC	3 cut(s)	157, 366, 612
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	790
NspV	TTCGAA	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	183
PciSI	GCTCTTC	2 cut(s)	273, 918
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	776
PflMI	CCANNNNNTGG	1 cut(s)	165
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	4 cut(s)	13, 164, 194, 760
PpsI	GAGTC	4 cut(s)	13, 164, 194, 760
PsiI	TTATAA	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	157, 366, 612
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	3 cut(s)	610, 611, 637
PspXI	VCTCGAGB	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	989
PvuI	CGATCG	1 cut(s)	409
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	801
SapI	GCTCTTC	2 cut(s)	273, 918
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	6 cut(s)	21, 95, 406, 505, 729, 952
Sau96I	GGNCC	3 cut(s)	610, 611, 637
SchI	GAGTC	4 cut(s)	14, 164, 195, 761
ScrFI	CCNGG	2 cut(s)	153, 557
SduI	GDGCHC	4 cut(s)	158, 184, 369, 614
SfaNI	GCATC	1 cut(s)	937
Sfr274I	CTCGAG	1 cut(s)	183
SfuI	TTCGAA	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	3 cut(s)	146, 183, 545
SmoI	CTYRAG	3 cut(s)	146, 183, 545
Sse9I	AATT	3 cut(s)	308, 457, 510
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	3 cut(s)	701, 849, 1039
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	151, 555
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	403, 472, 1025
TaiI	ACGT	2 cut(s)	252, 321
TasI	AATT	3 cut(s)	308, 457, 510
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	667
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	326, 464, 614, 936
Van91I	CCANNNNNTGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	802
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	3 cut(s)	701, 849, 1039
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.