Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

14699707 .. 14700162

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGTACTACAAAGTCCCCACTAGTACCCAATCTGACGACAAAAACGCAGCATCATCGGCTGTCGTCGGTCAGTCGCCTCACACAGACAAAAGTTTCATAACAGTTCTTGACCAGATTAACCAAGTGCAAGGTCTAGAGATTCTCACCAAACAAGGCAATTGGGTTCAAGTTACTATCCCAAAAGGAGCTGTTGTGGTCTCTGTTGGCGACGCATTCAAGGTTTGGAGCAATGGTAGACTTCATGCTTCAAGACACAGAGTGATCATGAGCAGTAGTAGTACTGTAGACAACAAATCAGAAGACAGGCACTCTTGTGCGTTGTTTGGATTGCCGGAGGAGGAGTCGATGATCCAACCGCGAAATGAGCTTGTAGACTGTATCGGCCATTCAACCTCGCCGGATTCTTTAAGTACATTACCACTAATATTTATGCTCTTTCTGATAATCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

151

Amino Acids

16.61

Weight (kDa)

6.5

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	16 - 109	1.4e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	238, 288, 375
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	359, 451
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	385
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	4 cut(s)	8, 28, 283, 415
AgsI	TTSAA	4 cut(s)	170, 220, 252, 393
AhlI	ACTAGT	1 cut(s)	23
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	191, 370
AluI	AGCT	2 cut(s)	191, 370
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	39, 73
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 137
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	2 cut(s)	8, 283
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	205
BsaXI	ACNNNNNCTCC	6 cut(s)	180, 210, 220, 250, 329, 359
Bse3DI	GCAATG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	353, 356
BseXI	GCAGC	1 cut(s)	62
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	335, 401
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	387
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	264, 351
BspACI	CCGC	2 cut(s)	359, 451
BspANI	GGCC	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	267
BspPI	GGATC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	238
BssMI	GATC	2 cut(s)	264, 351
Bst4CI	ACNGT	3 cut(s)	106, 286, 380
BstFNI	CGCG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	267, 354
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	264, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 367
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	267
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	4 cut(s)	7, 27, 282, 414
CviAII	CATG	2 cut(s)	245, 268
CviJI	RGCY	4 cut(s)	62, 191, 370, 387
CviKI_1	RGCY	4 cut(s)	62, 191, 370, 387
CviQI	GTAC	4 cut(s)	7, 27, 282, 414
DpnI	GATC	2 cut(s)	266, 353
DpnII	GATC	2 cut(s)	264, 351
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	385
Eco31I	GGTCTC	1 cut(s)	205
FaeI	CATG	2 cut(s)	248, 271
FaiI	YATR	4 cut(s)	101, 246, 269, 434
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	2 cut(s)	244, 267
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	3 cut(s)	238, 288, 375
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	24, 137
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	2 cut(s)	335, 401
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	248, 271
HinfI	GANTC	3 cut(s)	142, 344, 404
HpaII	CCGG	2 cut(s)	335, 401
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	239, 289, 376
Hpy188I	TCNGA	3 cut(s)	37, 301, 444
Hpy188III	TCNNGA	4 cut(s)	110, 137, 252, 268
Hpy8I	GTNNAC	3 cut(s)	239, 289, 376
Hpy99I	CGWCG	2 cut(s)	71, 215
HpyCH4III	ACNGT	3 cut(s)	106, 286, 380
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 367
Hsp92II	CATG	2 cut(s)	248, 271
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 351
LmnI	GCTCC	2 cut(s)	188, 228
LpnPI	CCDG	4 cut(s)	128, 292, 348, 414
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	2 cut(s)	24, 137
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	266, 353
MboI	GATC	2 cut(s)	264, 351
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	160
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	90, 331, 334, 406
MseI	TTAA	2 cut(s)	120, 410
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	2 cut(s)	335, 401
MunI	CAATTG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	215
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	59, 367
NdeII	GATC	2 cut(s)	264, 351
NlaIII	CATG	2 cut(s)	248, 271
OliI	CACNNNNGTG	1 cut(s)	315
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	142, 404
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
RsaI	GTAC	4 cut(s)	8, 28, 283, 415
RsaNI	GTAC	4 cut(s)	7, 27, 282, 414
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	120, 410
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	264, 351
ScaI	AGTACT	2 cut(s)	8, 283
SchI	GAGTC	1 cut(s)	353
SetI	ASST	5 cut(s)	136, 193, 225, 372, 398
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	2 cut(s)	359, 451
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	2 cut(s)	24, 137
TaaI	ACNGT	3 cut(s)	106, 286, 380
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	160
TatI	WGTACW	3 cut(s)	6, 281, 413
TfiI	GAWTC	2 cut(s)	142, 404
Tru1I	TTAA	2 cut(s)	120, 410
Tru9I	TTAA	2 cut(s)	120, 410
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	17, 88, 233
XbaI	TCTAGA	1 cut(s)	136
XmiI	GTMKAC	3 cut(s)	238, 288, 375
XspI	CTAG	2 cut(s)	24, 137
ZrmI	AGTACT	2 cut(s)	8, 283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.