Rh5AG143200

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
15010921 .. 15011570
650 bp
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UTR
Exon/CDS
Intron
Rh5AG143200.1

Sequence Viewer

Length: 315 bp
ATGGTCTCTGTTGGCGACGCATTCAAGGTTTGGAGCAATGGTAGACTTCGTGCTTCAAGACACAGGGTCATCACGAGCAGTAGTAGTACTGTAGACAACAAATCAGAAGACAGGTACTCTTGTGCGTTGTTTGGATTGCCAGAGGAGGAGTCAATAATCCAACCGCAAAATGAGCTTGTAGACATGGAGCATCCTCTGCTGTATCGACCATTCATACTCGCCGGATTCTTTAAGTACATTACCACCAATATTTATTCTCCTTCTAATAATCCGCTAAGAAATTATGCTGGAATTGAACTAGTACTGCATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.83

Weight (kDa)

6.26

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 2 - 44 7e-06 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 43, 93, 180
AciI CCGC 2 cut(s) 164, 272
AfaI GTAC 4 cut(s) 88, 116, 236, 303
AgsI TTSAA 3 cut(s) 25, 57, 296
AhdI GACNNNNNGTC 1 cut(s) 65
AhlI ACTAGT 1 cut(s) 298
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 10
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BauI CACGAG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 90
BmcAI AGTACT 2 cut(s) 88, 303
BmeRI GACNNNNNGTC 1 cut(s) 65
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse3DI GCAATG 1 cut(s) 43
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 43
BseRI GAGGAG 2 cut(s) 158, 161
BsiSI CCGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 10
BspACI CCGC 2 cut(s) 164, 272
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 43
BssSI CACGAG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 172, 196
BstSFI CTRYAG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 190
CseI GACGC 1 cut(s) 26
Csp6I GTAC 4 cut(s) 87, 115, 235, 302
CviAII CATG 1 cut(s) 184
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
CviQI GTAC 4 cut(s) 87, 115, 235, 302
DdeI CTNAG 1 cut(s) 275
DriI GACNNNNNGTC 1 cut(s) 65
Eam1105I GACNNNNNGTC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 10
FaeI CATG 1 cut(s) 187
FaiI YATR 4 cut(s) 185, 215, 285, 309
FatI CATG 1 cut(s) 183
FblI GTMKAC 3 cut(s) 43, 93, 180
FokI GGATG 1 cut(s) 177
FspBI CTAG 1 cut(s) 299
HapII CCGG 1 cut(s) 222
HgaI GACGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 187
HinfI GANTC 2 cut(s) 149, 225
HpaII CCGG 1 cut(s) 222
Hpy166II GTNNAC 3 cut(s) 44, 94, 181
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 57, 73
Hpy8I GTNNAC 3 cut(s) 44, 94, 181
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 196
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 187
LmnI GCTCC 2 cut(s) 33, 187
LpnPI CCDG 5 cut(s) 49, 97, 153, 235, 273
LweI GCATC 1 cut(s) 199
MaeI CTAG 1 cut(s) 299
MboII GAAGA 1 cut(s) 119
MluCI AATT 3 cut(s) 280, 291, 310
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 136, 139, 204
MseI TTAA 1 cut(s) 231
MspI CCGG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 172, 196
NlaIII CATG 1 cut(s) 187
PctI GAATGC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 225
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
RsaI GTAC 4 cut(s) 88, 116, 236, 303
RsaNI GTAC 4 cut(s) 87, 115, 235, 302
SaqAI TTAA 1 cut(s) 231
ScaI AGTACT 2 cut(s) 88, 303
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 30, 116, 177
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 90
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 3 cut(s) 280, 291, 310
SsiI CCGC 2 cut(s) 164, 272
SspI AATATT 1 cut(s) 250
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 205
TasI AATT 3 cut(s) 280, 291, 310
TatI WGTACW 3 cut(s) 86, 234, 301
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 202
XmiI GTMKAC 3 cut(s) 43, 93, 180
XspI CTAG 1 cut(s) 299
ZrmI AGTACT 2 cut(s) 88, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.