Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

27778875 .. 27780181

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1295900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAGTCGACATGCAAAAAAGTCCAGCAATTAAGCAGTTGAAGACTGGCTGCTTTCAAGCCACTTACCACGGAGTACCTTTGGGCCTTCATAACGACATGTTTTCTGTGATTAAAGGTCTATTTGATCTTCCAGTTGAAACGAAATGCCAGAAGAACAGTGATCCCAGCTATGTTAGCCAATATTCTTTCCTTCATCTCTACAAATCCTTGGGAGTCGAGTACGCGACAAATATGATGTGGCCTGCAGGAAATGACGAATTTTGCAATGGCAGAGTGCCGTCTTGTTTTCACCAAGTGGTCATGAAACAGAACAAAACCAGATTATCCATGGGACTCTTCTCATTCCTTAATGGAACTGTACAAGTTCCAGAAGAGCTGATCGACGACAAACACCCCTTATCCTATAAACCATTTGATCATGTCAGTTACCTTCACTTCGTTGAAACACCAGAGGCAATGCAATCCGAGTGTGCTATCAAAATCTACCGTGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

6.36

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	15 - 58	8.8e-07	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	227
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	78, 224, 363
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	43, 59, 140, 446
AluBI	AGCT	2 cut(s)	171, 379
AluI	AGCT	2 cut(s)	171, 379
AlwI	GGATC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	85, 242
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	418
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	70, 210, 330, 490
Bse1I	ACTGG	2 cut(s)	52, 134
Bse3DI	GCAATG	2 cut(s)	274, 465
BseDI	CCNNGG	4 cut(s)	70, 210, 330, 490
BseMI	GCAATG	2 cut(s)	274, 465
BseNI	ACTGG	2 cut(s)	52, 134
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	87, 244
BslFI	GGGAC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	87, 244
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	127, 163, 381, 418
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	2 cut(s)	87, 244
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	158
BspQI	GCTCTTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	274, 465
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	52, 134
BssECI	CCNNGG	4 cut(s)	70, 210, 330, 490
BssMI	GATC	4 cut(s)	127, 163, 381, 418
BssT1I	CCWWGG	2 cut(s)	210, 330
Bst4CI	ACNGT	3 cut(s)	161, 361, 491
Bst6I	CTCTTC	2 cut(s)	344, 369
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	3 cut(s)	70, 330, 490
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	4 cut(s)	130, 166, 384, 421
BstMBI	GATC	4 cut(s)	127, 163, 381, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNSI	RCATGY	2 cut(s)	16, 103
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	87, 244
BtgI	CCRYGG	3 cut(s)	70, 330, 490
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	246
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	77, 223, 362
CviAII	CATG	5 cut(s)	13, 100, 304, 331, 422
CviJI	RGCY	7 cut(s)	51, 62, 87, 171, 180, 244, 379
CviKI_1	RGCY	7 cut(s)	51, 62, 87, 171, 180, 244, 379
CviQI	GTAC	3 cut(s)	77, 223, 362
DpnI	GATC	4 cut(s)	129, 165, 383, 420
DpnII	GATC	4 cut(s)	127, 163, 381, 418
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	344, 369
EarI	CTCTTC	2 cut(s)	344, 369
Eco130I	CCWWGG	2 cut(s)	210, 330
EcoT14I	CCWWGG	2 cut(s)	210, 330
ErhI	CCWWGG	2 cut(s)	210, 330
FaeI	CATG	5 cut(s)	16, 103, 307, 334, 425
FaiI	YATR	9 cut(s)	14, 93, 101, 174, 236, 305, 332, 408, 423
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	5 cut(s)	12, 99, 303, 330, 421
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	87, 244
Hin1II	CATG	5 cut(s)	16, 103, 307, 334, 425
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	216, 336
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	2 cut(s)	304, 371
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	98, 203, 443
HpyCH4III	ACNGT	3 cut(s)	161, 361, 491
HpyCH4V	TGCA	4 cut(s)	16, 248, 267, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	16, 103, 307, 334, 425
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	127, 163, 381, 418
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	4 cut(s)	129, 165, 383, 420
MboI	GATC	4 cut(s)	127, 163, 381, 418
MboII	GAAGA	5 cut(s)	55, 122, 166, 331, 386
MluCI	AATT	2 cut(s)	30, 260
MlyI	GAGTC	2 cut(s)	225, 330
MnlI	CCTC	1 cut(s)	448
MseI	TTAA	3 cut(s)	33, 114, 351
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	127, 163, 381, 418
NlaIII	CATG	5 cut(s)	16, 103, 307, 334, 425
NspI	RCATGY	2 cut(s)	16, 103
PagI	TCATGA	1 cut(s)	303
PciI	ACATGT	1 cut(s)	99
PciSI	GCTCTTC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	2 cut(s)	224, 330
PpsI	GAGTC	2 cut(s)	224, 330
PscI	ACATGT	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	85
PstI	CTGCAG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	78, 224, 363
RsaNI	GTAC	3 cut(s)	77, 223, 362
SalI	GTCGAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	33, 114, 351
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	4 cut(s)	127, 163, 381, 418
Sau96I	GGNCC	1 cut(s)	85
SbfI	CCTGCAGG	1 cut(s)	250
SchI	GAGTC	2 cut(s)	225, 330
SdaI	CCTGCAGG	1 cut(s)	250
SetI	ASST	5 cut(s)	82, 121, 173, 381, 435
SfcI	CTRYAG	1 cut(s)	246
Sse8387I	CCTGCAGG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	30, 260
SspI	AATATT	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	210, 330
TaaI	ACNGT	3 cut(s)	161, 361, 491
TaqI	TCGA	3 cut(s)	9, 219, 384
TasI	AATT	2 cut(s)	30, 260
TatI	WGTACW	1 cut(s)	361
Tru1I	TTAA	3 cut(s)	33, 114, 351
Tru9I	TTAA	3 cut(s)	33, 114, 351
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	80, 185, 320
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	16, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.