Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

14996872 .. 14998626

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGATATGGTGGCAATTCATGATGAAGAAGTAATCCCAACTCTTGAATTTTCTAGTGAGTTTTTAGTCTCAAAGCAAGGGAGTGAGGAATGGAAAGCTATGAGGAACAAAGTGAGAGAGGCATGTCAGAGTTATGGTTGCTTTCTGCTGTTGGTGCGGGAAGAGACAATCCCCATCAACTTACGTGAAGAAATGGTGATGGCCATGAAGGCAGAACACAAAAATACGAACTCTTTCCGTCACTACCAAGGCAAATCCCCCAACTTTCCATTGAGCGAAAGCTTTGGAATTGATAGTTCAGACCATATTGATGCAGCTCAAGCCTTCACCAACCTCATGTGGCCTCAAGGGAACCCTGCGCTTTGTGAGATAATGAAATCAATGAGGTCAAAGCTGATGGATTTGAACTTCACCATTGTCAAAATGATTTTTGAGAGCTTTTGCATTGAGAAGCACTACAAGTATACCCAATCTGAGGACAAAAACGCAGCATCATCGGCTGTCGTCGGTCAGTCGCCTCACACAGACAAAAATTTCATAACAGTTCTTTACCATGTGCAAGTTCAAGTCACTATCCCAAAAGGAGCTGTTGTGGTCTCTGTTGGCGACACATTCAAGGTTTGGAGCAATGGTAGACTTCATGCTTCAAGACACAGGGTGATCATGAGCAGTGTGGGGGTCGTCAACAAATTTGACCATCCAATCAAGGCAATTAAAGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

241

Amino Acids

27.4

Weight (kDa)

7.15

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	155 - 221	7.1e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	464, 634
AciI	CCGC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	47, 532, 689
AdeI	CACNNNGTG	1 cut(s)	658
AfiI	CCNNNNNNNGG	1 cut(s)	475
AgsI	TTSAA	5 cut(s)	47, 406, 566, 616, 648
AluBI	AGCT	6 cut(s)	98, 282, 317, 394, 438, 587
AluI	AGCT	6 cut(s)	98, 282, 317, 394, 438, 587
Alw26I	GTCTC	3 cut(s)	73, 158, 601
AoxI	GGCC	2 cut(s)	201, 341
ApeKI	GCWGC	2 cut(s)	314, 488
ApoI	RAATTY	3 cut(s)	47, 532, 689
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	361
AsuHPI	GGTGA	4 cut(s)	208, 319, 403, 670
BalI	TGGCCA	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	326, 500
BccI	CCATC	4 cut(s)	182, 193, 391, 705
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	3 cut(s)	73, 158, 601
BfaI	CTAG	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	209
BisI	GCNGC	2 cut(s)	315, 489
BlsI	GCNGC	2 cut(s)	316, 490
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	2 cut(s)	301, 500
BpuEI	CTTGAG	2 cut(s)	303, 330
BsaAI	YACGTR	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	4 cut(s)	576, 606, 616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	634
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	326, 500
BshFI	GGCC	2 cut(s)	203, 343
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	3 cut(s)	73, 158, 601
BsnI	GGCC	2 cut(s)	203, 343
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	2 cut(s)	203, 343
BspCNI	CTCAG	1 cut(s)	466
BspHI	TCATGA	2 cut(s)	19, 663
BspLI	GGNNCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	1 cut(s)	660
BssNAI	GTATAC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	697
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	3 cut(s)	73, 158, 601
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 209, 320, 497
BstNSI	RCATGY	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	326, 500
BstZ17I	GTATAC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	203, 343
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
CciI	TCATGA	2 cut(s)	19, 663
CfoI	GCGC	1 cut(s)	361
CviAII	CATG	7 cut(s)	20, 123, 205, 337, 554, 641, 664
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
DraIII	CACNNNGTG	1 cut(s)	658
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	7 cut(s)	23, 126, 208, 340, 557, 644, 667
FatI	CATG	7 cut(s)	19, 122, 204, 336, 553, 640, 663
FauI	CCCGC	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	660
FblI	GTMKAC	2 cut(s)	464, 634
Fnu4HI	GCNGC	2 cut(s)	315, 489
FokI	GGATG	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	315, 489
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	2 cut(s)	315, 489
HaeIII	GGCC	2 cut(s)	203, 343
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	7 cut(s)	23, 126, 208, 340, 557, 644, 667
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	280
HphI	GGTGA	4 cut(s)	208, 319, 403, 670
Hpy166II	GTNNAC	3 cut(s)	465, 635, 685
Hpy188I	TCNGA	3 cut(s)	129, 301, 475
Hpy188III	TCNNGA	4 cut(s)	20, 44, 648, 664
Hpy8I	GTNNAC	3 cut(s)	465, 635, 685
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	202, 334
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	314, 444, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 209, 320, 497
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	7 cut(s)	23, 126, 208, 340, 557, 644, 667
HspAI	GCGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	584, 624
LpnPI	CCDG	2 cut(s)	369, 640
Lsp1109I	GCAGC	2 cut(s)	326, 500
LweI	GCATC	2 cut(s)	301, 500
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	239, 568
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	3 cut(s)	38, 173, 200
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	6 cut(s)	15, 47, 288, 532, 689, 711
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	8 cut(s)	79, 96, 112, 344, 354, 378, 469, 528
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	154, 209, 320, 497
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	7 cut(s)	23, 126, 208, 340, 557, 644, 667
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	239, 568
NspI	RCATGY	1 cut(s)	126
PagI	TCATGA	2 cut(s)	19, 663
PdmI	GAANNNNTTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	316, 490
Ppu21I	YACGTR	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	2 cut(s)	315, 489
Sau3AI	GATC	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	301, 500
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	318, 345
SmoI	CTYRAG	2 cut(s)	318, 345
Sse9I	AATT	6 cut(s)	15, 47, 288, 532, 689, 711
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	187
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	6 cut(s)	15, 47, 288, 532, 689, 711
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	239, 568
TseI	GCWGC	2 cut(s)	314, 488
Tsp45I	GTSAC	2 cut(s)	239, 568
TspDTI	ATGAA	6 cut(s)	8, 39, 221, 389, 526, 629
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	676
XapI	RAATTY	3 cut(s)	47, 532, 689
XceI	RCATGY	1 cut(s)	126
XmiI	GTMKAC	2 cut(s)	464, 634
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.