Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

24111190 .. 24112739

Gene Structure 1550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1199600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATCAGAAACCCCACTCGGACTTCCCATCATAGACTTCTCCAAACCAGACCTCAACCAAGGAACCAAAGAGTGGGACTTAGTGAGAGCTCAAGTCCATAATGCGCTCGAAGAGTATGGCTGCTTCGAGGCCTTGTTCAACAAAGTGCCTTCTGACATTCGAAAGTCAACAATTGAATCAATGGAAGAACTTTTCGACCTTCCTTTACAAACCAAATTACAGAATGTTTCTAAAAAGCCCTACCATGGGTATGTTGGGCAGTACCCCATGGTGCCACTATACGAGAGCATGGGGTTTGACGATGCAAATGTCTATGAACAAGTTGAAAGCTTGACAAATACCTTGTGGCCTCAAGGAAACCCGAGATTTTGCACAAGCATACAATCATTCTCAGAGCAAGTTTCGGAGTTGGATCAAATAATCAGAAGGATGATTCTGGAGAGCTTGGGACTAGAAAAATACTTTGAGGAGCATGTAGAATCAACCAACTACCTTCTTCGAGTGATGAAATATAAAGGACCTGAAACCAAGGAAAGTAAGTTGGGGATAAACGCTCACACAGACAAGAACATTGTCACCATTTTGTATCAAAACCAAGTTGATGGTTTAGAAGTGCAAACAAAAGCTTGCAAATGGATCAAAGTCAAGCCTTCATCACCGCACTCTTTCATCGCCATGATTGGCGACTCTCTTCATGCATGGACAAACGGTCGACTACATTCTCCATATCATAGAGTGATGATGAGTGGAAATGAGGCTAGGTACTCAACTGGATTGTTCTCCATCCCAAAGGCAGGTTATATTATAAAAGCCCCGGAGGAAGTTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCTTTGATCACGTTGAATTTCTAGGGTTCTACTACACGGAGGCTGGCCAGAGAGCTCAGTCTGCTTTGAAAACTTACTGTGGAGTCCAAGACTTGGTTTTGTCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

36.69

Weight (kDa)

5.43

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 262	6.7e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	788
AccB1I	GGYRCC	1 cut(s)	274
AccB7I	CCANNNNNTGG	2 cut(s)	75, 952
AccI	GTMKAC	1 cut(s)	715
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	2 cut(s)	423, 647
AcoI	YGGCCR	1 cut(s)	904
AcsI	RAATTY	1 cut(s)	875
AfaI	GTAC	2 cut(s)	266, 767
AfiI	CCNNNNNNNGG	5 cut(s)	75, 248, 249, 797, 952
AgsI	TTSAA	5 cut(s)	142, 179, 329, 875, 928
AhdI	GACNNNNNGTC	1 cut(s)	711
AluBI	AGCT	5 cut(s)	92, 333, 447, 629, 914
AluI	AGCT	5 cut(s)	92, 333, 447, 629, 914
Alw21I	GWGCWC	3 cut(s)	94, 843, 916
AlwI	GGATC	2 cut(s)	423, 647
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	3 cut(s)	132, 350, 904
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	875
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	818
AsuHPI	GGTGA	2 cut(s)	571, 651
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	906
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	2 cut(s)	94, 916
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	3 cut(s)	94, 843, 916
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	3 cut(s)	38, 599, 794
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	818
BfaI	CTAG	3 cut(s)	455, 762, 881
BfuAI	ACCTGC	1 cut(s)	788
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	818
Bme18I	GGWCC	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	711
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	67, 276
BmrFI	CCNGG	1 cut(s)	818
BmsI	GCATC	2 cut(s)	14, 295
BpmI	CTGGAG	1 cut(s)	461
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	78, 339
BpuMI	CCSGG	1 cut(s)	818
BsaJI	CCNNGG	5 cut(s)	61, 247, 270, 531, 816
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 248, 249, 797, 952
Bse1I	ACTGG	1 cut(s)	778
BseDI	CCNNGG	5 cut(s)	61, 247, 270, 531, 816
BseGI	GGATG	3 cut(s)	438, 786, 838
BseLI	CCNNNNNNNGG	5 cut(s)	75, 248, 249, 797, 952
BseMII	CTCAG	2 cut(s)	408, 929
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	715
BshFI	GGCC	3 cut(s)	134, 352, 906
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	715
BsiHKAI	GWGCWC	3 cut(s)	94, 843, 916
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	818
BslFI	GGGAC	2 cut(s)	92, 465
BslI	CCNNNNNNNGG	5 cut(s)	75, 248, 249, 797, 952
BsmFI	GGGAC	2 cut(s)	92, 465
BsnI	GGCC	3 cut(s)	134, 352, 906
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	94, 843, 916
Bsp143I	GATC	3 cut(s)	415, 639, 865
Bsp19I	CCATGG	2 cut(s)	247, 270
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	3 cut(s)	134, 352, 906
BspCNI	CTCAG	2 cut(s)	407, 928
BspLI	GGNNCC	2 cut(s)	67, 276
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	423, 647
BspQI	GCTCTTC	1 cut(s)	831
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	778
BssECI	CCNNGG	5 cut(s)	61, 247, 270, 531, 816
BssMI	GATC	3 cut(s)	415, 639, 865
BssT1I	CCWWGG	4 cut(s)	61, 247, 270, 531
Bst4CI	ACNGT	2 cut(s)	713, 938
Bst6I	CTCTTC	3 cut(s)	108, 699, 831
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	631, 904
BstDEI	CTNAG	4 cut(s)	82, 394, 915, 966
BstDSI	CCRYGG	2 cut(s)	247, 270
BstF5I	GGATG	3 cut(s)	438, 786, 838
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	3 cut(s)	418, 642, 868
BstMBI	GATC	3 cut(s)	415, 639, 865
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	3 cut(s)	847, 856, 920
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	816
BstV1I	GCAGC	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	134, 352, 906
BtgI	CCRYGG	2 cut(s)	247, 270
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	3 cut(s)	438, 786, 838
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	2 cut(s)	631, 904
CfoI	GCGC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	265, 766
CviAII	CATG	7 cut(s)	248, 271, 292, 476, 679, 698, 702
CviQI	GTAC	2 cut(s)	265, 766
DdeI	CTNAG	4 cut(s)	82, 394, 915, 966
DpnI	GATC	3 cut(s)	417, 641, 867
DpnII	GATC	3 cut(s)	415, 639, 865
DriI	GACNNNNNGTC	1 cut(s)	711
EaeI	YGGCCR	1 cut(s)	904
Eam1104I	CTCTTC	3 cut(s)	108, 699, 831
Eam1105I	GACNNNNNGTC	1 cut(s)	711
EarI	CTCTTC	3 cut(s)	108, 699, 831
Ecl136II	GAGCTC	2 cut(s)	92, 914
Eco130I	CCWWGG	4 cut(s)	61, 247, 270, 531
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	2 cut(s)	94, 916
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	2 cut(s)	92, 914
Eco88I	CYCGRG	1 cut(s)	364
EcoICRI	GAGCTC	2 cut(s)	92, 914
EcoO109I	RGGNCCY	1 cut(s)	521
EcoT14I	CCWWGG	4 cut(s)	61, 247, 270, 531
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	94, 916
ErhI	CCWWGG	4 cut(s)	61, 247, 270, 531
FaeI	CATG	7 cut(s)	251, 274, 295, 479, 682, 701, 705
FaqI	GGGAC	2 cut(s)	92, 465
FatI	CATG	7 cut(s)	247, 270, 291, 475, 678, 697, 701
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	3 cut(s)	445, 773, 845
FriOI	GRGCYC	2 cut(s)	94, 916
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	3 cut(s)	455, 762, 881
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	134, 352, 906
HapII	CCGG	1 cut(s)	818
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	7 cut(s)	251, 274, 295, 479, 682, 701, 705
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	2 cut(s)	171, 716
HindII	GTYRAC	2 cut(s)	171, 716
HindIII	AAGCTT	2 cut(s)	331, 627
HinfI	GANTC	5 cut(s)	179, 436, 482, 689, 942
HpaII	CCGG	1 cut(s)	818
HphI	GGTGA	2 cut(s)	571, 651
Hpy166II	GTNNAC	2 cut(s)	171, 716
Hpy188I	TCNGA	6 cut(s)	10, 23, 157, 397, 409, 428
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	2 cut(s)	171, 716
HpyAV	CCTTC	5 cut(s)	162, 212, 423, 506, 663
HpyCH4III	ACNGT	2 cut(s)	713, 938
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	5 cut(s)	308, 375, 619, 633, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	847, 856, 920
HpyF3I	CTNAG	4 cut(s)	82, 394, 915, 966
HpySE526I	ACGT	1 cut(s)	870
Hsp92II	CATG	7 cut(s)	251, 274, 295, 479, 682, 701, 705
HspAI	GCGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	3 cut(s)	415, 639, 865
LguI	GCTCTTC	1 cut(s)	831
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	8 cut(s)	63, 425, 537, 759, 783, 831, 888, 920
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	14, 295
MaeI	CTAG	3 cut(s)	455, 762, 881
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	3 cut(s)	417, 641, 867
MboI	GATC	3 cut(s)	415, 639, 865
MboII	GAAGA	5 cut(s)	125, 200, 491, 686, 848
MfeI	CAATTG	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	94, 843, 916
MlsI	TGGCCA	1 cut(s)	906
MluCI	AATT	3 cut(s)	174, 218, 875
MluNI	TGGCCA	1 cut(s)	906
MlyI	GAGTC	2 cut(s)	683, 951
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	65, 124, 363, 463, 751, 814, 892
Mox20I	TGGCCA	1 cut(s)	906
Mph1103I	ATGCAT	1 cut(s)	703
MscI	TGGCCA	1 cut(s)	906
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	2 cut(s)	252, 677
Msp20I	TGGCCA	1 cut(s)	906
MspI	CCGG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	818
MunI	CAATTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	847, 856, 920
NciI	CCSGG	1 cut(s)	818
NcoI	CCATGG	2 cut(s)	247, 270
NdeII	GATC	3 cut(s)	415, 639, 865
NlaIII	CATG	7 cut(s)	251, 274, 295, 479, 682, 701, 705
NlaIV	GGNNCC	2 cut(s)	67, 276
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	831
PfeI	GAWTC	3 cut(s)	179, 436, 482
PflMI	CCANNNNNTGG	2 cut(s)	75, 952
PkrI	GCNGC	1 cut(s)	125
PleI	GAGTC	2 cut(s)	683, 950
PpsI	GAGTC	2 cut(s)	683, 950
PpuMI	RGGWCCY	1 cut(s)	521
PsiI	TTATAA	1 cut(s)	809
Psp124BI	GAGCTC	2 cut(s)	94, 916
Psp5II	RGGWCCY	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	67, 276
PspPI	GGNCC	1 cut(s)	521
PspPPI	RGGWCCY	1 cut(s)	521
RsaI	GTAC	2 cut(s)	266, 767
RsaNI	GTAC	2 cut(s)	265, 766
RseI	CAYNNNNRTG	2 cut(s)	252, 677
SacI	GAGCTC	2 cut(s)	94, 916
SalI	GTCGAC	1 cut(s)	714
SapI	GCTCTTC	1 cut(s)	831
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	3 cut(s)	415, 639, 865
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	2 cut(s)	683, 951
ScrFI	CCNGG	1 cut(s)	818
SduI	GDGCHC	3 cut(s)	94, 843, 916
SfaNI	GCATC	2 cut(s)	14, 295
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	252, 677
SmlI	CTYRAG	2 cut(s)	93, 354
SmoI	CTYRAG	2 cut(s)	93, 354
Sse9I	AATT	3 cut(s)	174, 218, 875
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	3 cut(s)	455, 762, 881
SstI	GAGCTC	2 cut(s)	94, 916
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	816
StyI	CCWWGG	4 cut(s)	61, 247, 270, 531
TaaI	ACNGT	2 cut(s)	713, 938
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	6 cut(s)	111, 129, 163, 198, 502, 715
TasI	AATT	3 cut(s)	174, 218, 875
TfiI	GAWTC	3 cut(s)	179, 436, 482
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	6 cut(s)	333, 524, 645, 661, 686, 849
TspGWI	ACGGA	1 cut(s)	911
Van91I	CCANNNNNTGG	2 cut(s)	75, 952
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	1 cut(s)	479
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	3 cut(s)	455, 762, 881
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.