Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

5570813 .. 5572270

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G075700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCTCAGAAACCCCTCTCAAACTTCCCGTCATAGATTTTTCCAACCAAAGCCTAACTCCAGGCACAACAGAATGGAACACAGTGAGAGCCCAAGTCCACAACGCACTCGAAGAGTATGGTTGCTTCGAGGCATTGTTTAACAAAGTCCCTCCACACATTCGGAAGTCCATATTTCCATCAATTGAAGAGCTTTTCGACCTCCCTTTGCAAACCAAATTGCAAAATGTTTCCAAGAAACCCTTCCATGGCTATGTTGGGCAGTACCCTATGGTGCCACTCTACGAGAGCATGGGGGTTGATGATGCCAACGTCTACGAACAAGTTCAAAGCTTGACAAACACCTTATGGCCTCAAGGAAACCCAAGCTTTTGCAAAACTATACAATCCTTCTCGGAGCAAGTTTCAGAGTTGGATCAAATCATCAGGAGGATGATTCTGGAGAGCTTGGGGCTTGAGAAGTACTTGGAGGAACACCTAGAATCAACCAACTACCTTCTTCGAGTGATGAAATATAAGGGACCTCAAACCAACGAGACTAAGTTGGGGCTAAATGCTCACACAGACAAGAACATTGTCACCATTTTGTACCAAAACCAAGTTGATGGGTTAGAAGTACAAAACAAAGATGGCAAATGGATCAATGTCAAGCCTTCACCAGACTCTTTCATCGCTATGATCGGCGATTCCCTCTACGCATGGACAAATGGGAGGCTGCATTCTCCATATCATAGGGTTATGATGAGTGGAAATGAGGTTAGGTACTCAACTGGATTGTTCTCTATCCCTAAAGAAGGCTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCTTTGATCATGTTCAATTTCTTGGGTTCTATTATTCAGAGGCTGGGCAGAGAGCTCACTCTGCTTTGAAGACTTACTGTGGTGTCCAAGACTTTGCCTTTTCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

36.63

Weight (kDa)

5.5

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	315
AclWI	GGATC	2 cut(s)	423, 647
AfaI	GTAC	5 cut(s)	266, 464, 590, 618, 764
AfiI	CCNNNNNNNGG	3 cut(s)	248, 794, 820
AgsI	TTSAA	4 cut(s)	188, 329, 872, 925
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	5 cut(s)	193, 333, 369, 447, 911
AluI	AGCT	5 cut(s)	193, 333, 369, 447, 911
Alw21I	GWGCWC	2 cut(s)	840, 913
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	2 cut(s)	423, 647
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	715
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	2 cut(s)	242, 324
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	571, 648
AvaII	GGWCC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	274
BanII	GRGCYC	3 cut(s)	8, 94, 913
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	2 cut(s)	840, 913
BbvI	GCAGC	1 cut(s)	702
BccI	CCATC	3 cut(s)	187, 599, 623
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	862
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	1 cut(s)	716
BlsI	GCNGC	1 cut(s)	717
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	276, 522
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	932
BpmI	CTGGAG	2 cut(s)	45, 461
BpuEI	CTTGAG	2 cut(s)	339, 476
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 794, 820
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	438, 835
BseLI	CCNNNNNNNGG	3 cut(s)	248, 794, 820
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	1 cut(s)	702
BseYI	CCCAGC	1 cut(s)	899
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	840, 913
BslFI	GGGAC	2 cut(s)	134, 534
BslI	CCNNNNNNNGG	3 cut(s)	248, 794, 820
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	134, 534
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	8, 94, 840, 913
Bsp143I	GATC	4 cut(s)	415, 639, 678, 862
Bsp19I	CCATGG	1 cut(s)	247
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	276, 522
BspPI	GGATC	2 cut(s)	423, 647
BspQI	GCTCTTC	2 cut(s)	183, 828
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	4 cut(s)	415, 639, 678, 862
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	85, 935
Bst6I	CTCTTC	3 cut(s)	108, 183, 828
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	7, 540
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	438, 835
BstKTI	GATC	4 cut(s)	418, 642, 681, 865
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	4 cut(s)	415, 639, 678, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	702
BstV2I	GAAGAC	1 cut(s)	932
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	438, 835
BtsIMutI	CAGTG	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	5 cut(s)	265, 463, 589, 617, 763
CviAII	CATG	4 cut(s)	248, 292, 699, 866
CviQI	GTAC	5 cut(s)	265, 463, 589, 617, 763
DdeI	CTNAG	2 cut(s)	7, 540
DpnI	GATC	4 cut(s)	417, 641, 680, 864
DpnII	GATC	4 cut(s)	415, 639, 678, 862
Eam1104I	CTCTTC	3 cut(s)	108, 183, 828
EarI	CTCTTC	3 cut(s)	108, 183, 828
Ecl136II	GAGCTC	1 cut(s)	911
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	3 cut(s)	8, 94, 913
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	911
EcoICRI	GAGCTC	1 cut(s)	911
EcoNI	CCTNNNNNAGG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	247
EcoT38I	GRGCYC	3 cut(s)	8, 94, 913
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	251, 295, 702, 869
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	2 cut(s)	134, 534
FatI	CATG	4 cut(s)	247, 291, 698, 865
FbaI	TGATCA	1 cut(s)	862
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	716
FokI	GGATG	2 cut(s)	445, 842
FriOI	GRGCYC	3 cut(s)	8, 94, 913
Fsp4HI	GCNGC	1 cut(s)	716
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	1 cut(s)	716
GsaI	CCCAGC	1 cut(s)	903
GsuI	CTGGAG	2 cut(s)	45, 461
HaeIII	GGCC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	251, 295, 702, 869
HindIII	AAGCTT	2 cut(s)	331, 367
HinfI	GANTC	4 cut(s)	436, 482, 662, 686
HphI	GGTGA	2 cut(s)	571, 648
Hpy166II	GTNNAC	2 cut(s)	100, 316
Hpy188I	TCNGA	5 cut(s)	10, 165, 397, 409, 895
Hpy188III	TCNNGA	2 cut(s)	427, 440
Hpy8I	GTNNAC	2 cut(s)	100, 316
HpyAV	CCTTC	5 cut(s)	253, 400, 506, 663, 788
HpyCH4III	ACNGT	2 cut(s)	85, 935
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	211, 223, 375, 718
HpyF10VI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
HpyF3I	CTNAG	2 cut(s)	7, 540
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	251, 295, 702, 869
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	415, 639, 678, 862
LguI	GCTCTTC	2 cut(s)	183, 828
LmnI	GCTCC	1 cut(s)	397
LpnPI	CCDG	8 cut(s)	48, 75, 412, 425, 672, 756, 828, 885
Lsp1109I	GCAGC	1 cut(s)	702
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	4 cut(s)	417, 641, 680, 864
MboI	GATC	4 cut(s)	415, 639, 678, 862
MboII	GAAGA	5 cut(s)	125, 200, 491, 845, 937
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	4 cut(s)	8, 94, 840, 913
MluCI	AATT	4 cut(s)	183, 218, 872, 961
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	2 cut(s)	69, 393
MroXI	GAANNNNTTC	2 cut(s)	242, 324
MseI	TTAA	2 cut(s)	141, 852
MslI	CAYNNNNRTG	2 cut(s)	252, 674
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	415, 639, 678, 862
NlaIII	CATG	4 cut(s)	251, 295, 702, 869
NlaIV	GGNNCC	2 cut(s)	276, 522
NmuCI	GTSAC	1 cut(s)	577
PciSI	GCTCTTC	2 cut(s)	183, 828
PctI	GAATGC	1 cut(s)	718
PdmI	GAANNNNTTC	2 cut(s)	242, 324
PfeI	GAWTC	3 cut(s)	436, 482, 686
PkrI	GCNGC	1 cut(s)	717
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	913
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	899
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	276, 522
PspPI	GGNCC	1 cut(s)	521
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	899
RsaI	GTAC	5 cut(s)	266, 464, 590, 618, 764
RsaNI	GTAC	5 cut(s)	265, 463, 589, 617, 763
RseI	CAYNNNNRTG	2 cut(s)	252, 674
SacI	GAGCTC	1 cut(s)	913
SapI	GCTCTTC	2 cut(s)	183, 828
SaqAI	TTAA	2 cut(s)	141, 852
SatI	GCNGC	1 cut(s)	716
Sau3AI	GATC	4 cut(s)	415, 639, 678, 862
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	4 cut(s)	8, 94, 840, 913
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	252, 674
SmlI	CTYRAG	2 cut(s)	354, 455
SmoI	CTYRAG	2 cut(s)	354, 455
Sse9I	AATT	4 cut(s)	183, 218, 872, 961
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	913
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	85, 935
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	111, 129, 198, 502
TasI	AATT	4 cut(s)	183, 218, 872, 961
TatI	WGTACW	2 cut(s)	462, 616
TfiI	GAWTC	3 cut(s)	436, 482, 686
Tru1I	TTAA	2 cut(s)	141, 852
Tru9I	TTAA	2 cut(s)	141, 852
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	524, 658, 846
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	2 cut(s)	242, 324
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.