Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

121743 .. 125669

Gene Structure 3927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgccttcaagcacccccatgatcgtccgtagtcttgatcctgaaaggatcctcttcgttcgaaggatgatgacgaagatgcgcaaggagcaggaatgccctactgccattggtcttgtgcctcacacagacaagagtgccctaacagttctgtgccagaacgaagtgcagggtctcgagatcctcaccaaacagggaaaatggatcgaagtcacagtccccgaacgagccgttgtggtcttcgttgggggtgcactcaaggcttggagcaacgcgaggcttcatgcagtgactcacagggtgatgatgagtaaagatattaaggaagacagatactcttttgcggtgtttgggtggccgaaggaggagttcatgattgaagtcccgaataagcttatcgacaataagcatcccctgctgtaccggccgttcaactttgccgagtactttacctacttcacggccaatattcgtgatgatgcactggaactctatgctggagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

8.53

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	83
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	5 cut(s)	32, 43, 56, 175, 212
AcoI	YGGCCR	3 cut(s)	356, 425, 462
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	2 cut(s)	422, 446
AgsI	TTSAA	3 cut(s)	9, 380, 433
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw21I	GWGCWC	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	5 cut(s)	32, 43, 56, 175, 212
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	356, 425, 462
ApaLI	GTGCAC	1 cut(s)	252
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	178, 313
AsuII	TTCGAA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	2 cut(s)	142, 256
BamHI	GGATCC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	232, 333
Bbv12I	GWGCWC	1 cut(s)	256
BceAI	ACGGC	3 cut(s)	215, 412, 477
BcoDI	GTCTC	1 cut(s)	179
BmcAI	AGTACT	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	3 cut(s)	69, 418, 469
BpiI	GAAGAC	2 cut(s)	232, 333
Bpu14I	TTCGAA	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	489
BseGI	GGATG	2 cut(s)	72, 409
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	380
BseSI	GKGCMC	2 cut(s)	142, 256
BseX3I	CGGCCG	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	428
BshFI	GGCC	3 cut(s)	358, 427, 464
BsiEI	CGRYCG	1 cut(s)	428
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	203, 368
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	2 cut(s)	203, 368
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	358, 427, 464
Bso31I	GGTCTC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	142, 256
Bsp143I	GATC	5 cut(s)	21, 37, 48, 180, 204
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	3 cut(s)	358, 427, 464
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	5 cut(s)	32, 43, 56, 175, 212
BspT104I	TTCGAA	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	1 cut(s)	423
BssMI	GATC	5 cut(s)	21, 37, 48, 180, 204
Bst4CI	ACNGT	2 cut(s)	148, 217
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	72, 409
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	24, 40, 51, 183, 207
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	5 cut(s)	21, 37, 48, 180, 204
BstMCI	CGRYCG	1 cut(s)	428
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 260, 415, 424
BstSLI	GKGCMC	2 cut(s)	142, 256
BstUI	CGCG	1 cut(s)	275
BstV2I	GAAGAC	2 cut(s)	232, 333
BstX2I	RGATCY	2 cut(s)	48, 180
BstYI	RGATCY	2 cut(s)	48, 180
BstZI	CGGCCG	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	358, 427, 464
BtsCI	GGATG	2 cut(s)	72, 409
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 482
CciI	TCATGA	1 cut(s)	372
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	421, 445
CviAII	CATG	3 cut(s)	19, 284, 373
CviJI	RGCY	7 cut(s)	230, 263, 280, 358, 394, 427, 464
CviKI_1	RGCY	7 cut(s)	230, 263, 280, 358, 394, 427, 464
CviQI	GTAC	2 cut(s)	421, 445
DpnI	GATC	5 cut(s)	23, 39, 50, 182, 206
DpnII	GATC	5 cut(s)	21, 37, 48, 180, 204
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	3 cut(s)	356, 425, 462
EagI	CGGCCG	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EclXI	CGGCCG	1 cut(s)	425
Eco31I	GGTCTC	1 cut(s)	179
Eco52I	CGGCCG	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	3 cut(s)	22, 287, 376
FaiI	YATR	4 cut(s)	20, 285, 374, 495
FaqI	GGGAC	2 cut(s)	203, 368
FatI	CATG	3 cut(s)	18, 283, 372
FokI	GGATG	2 cut(s)	79, 396
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	358, 427, 464
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	22, 287, 376
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	2 cut(s)	178, 313
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188III	TCNNGA	7 cut(s)	35, 41, 176, 178, 373, 385, 473
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	15, 57, 355
HpyCH4III	ACNGT	2 cut(s)	148, 217
HpyCH4V	TGCA	4 cut(s)	169, 254, 287, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 260, 415, 424
Hsp92II	CATG	3 cut(s)	22, 287, 376
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	21, 37, 48, 180, 204
LmnI	GCTCC	2 cut(s)	88, 267
LweI	GCATC	3 cut(s)	69, 418, 469
MaeIII	GTNAC	2 cut(s)	211, 289
MalI	GATC	5 cut(s)	23, 39, 50, 182, 206
MboI	GATC	5 cut(s)	21, 37, 48, 180, 204
MboII	GAAGA	4 cut(s)	46, 88, 232, 338
MflI	RGATCY	2 cut(s)	48, 180
MhlI	GDGCHC	2 cut(s)	142, 256
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	5 cut(s)	62, 132, 194, 270, 358
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	4 cut(s)	88, 260, 415, 424
NdeII	GATC	5 cut(s)	21, 37, 48, 180, 204
NlaIII	CATG	3 cut(s)	22, 287, 376
NlaIV	GGNNCC	1 cut(s)	50
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	2 cut(s)	211, 289
NsbI	TGCGCA	1 cut(s)	83
NspV	TTCGAA	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	372
PctI	GAATGC	1 cut(s)	101
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PsuI	RGATCY	2 cut(s)	48, 180
RsaI	GTAC	2 cut(s)	422, 446
RsaNI	GTAC	2 cut(s)	421, 445
RseI	CAYNNNNRTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	5 cut(s)	21, 37, 48, 180, 204
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	142, 256
SetI	ASST	2 cut(s)	396, 455
SfaNI	GCATC	3 cut(s)	69, 418, 469
Sfr274I	CTCGAG	1 cut(s)	176
SfuI	TTCGAA	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	176, 257
SmoI	CTYRAG	2 cut(s)	176, 257
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	148, 217
TaqI	TCGA	4 cut(s)	61, 177, 207, 399
TatI	WGTACW	1 cut(s)	444
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	294, 489
TseFI	GTSAC	2 cut(s)	211, 289
Tsp45I	GTSAC	2 cut(s)	211, 289
TspDTI	ATGAA	2 cut(s)	272, 361
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	294, 489
VneI	GTGCAC	1 cut(s)	252
XhoI	CTCGAG	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.