Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

52869991 .. 52870815

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0356300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGATCCTAATGCATCAAGCTCTCTCCTGAACCCTTCAAGCTTTCAATCATTTTATTATGAAGCTAAAGAGAGTGAGGGTATTATTGATCTTGGTCTTAGCCTCAGAGCTCTTCAACCTGAAACTTATCATCATCCATCAGCACATTTGGTGAGCTTGGAGGGCTATGATGGTCTGATAGATTGGCCCCAGGCTAACAACTTGAATTTGAAGAATTCAAATGTCACAAGTCCGAGAAATATACCGGAAGATTGTGATGAGGAAGCAGAGGGAGTCCAGAGCAAGGAGAGGTGGGCTTATGTGAAAGTTAACATGGATGGGATTGTTATTGGCAGAAAAGTTTGTGTACTTGATCATAGTGGCTACTCGAGCCTTGCATTTCAACTAGAAGACATGTTTGGTAGACAATCTGTATCTGGGTTGAGGTTGTTCCAGGTTGGATCTGAGTTTTCACTTTTTTACAAGGACAGAGATGACAATTGGAGAACTGTTGGTGACGTTCCATGGAGATCTGCCATTATAATCTTGTTGAACCATGTTATAATTGAAGCTTTGTGTATTGCACTACAAACAGGGAATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

4.77

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	72 - 170	8.2e-16	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	521, 542
AccI	GTMKAC	1 cut(s)	403
AclWI	GGATC	2 cut(s)	12, 448
AcsI	RAATTY	3 cut(s)	205, 214, 577
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	9 cut(s)	39, 47, 116, 205, 211, 219, 383, 532, 548
AjnI	CCWGG	2 cut(s)	189, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	6 cut(s)	21, 42, 65, 110, 156, 551
AluI	AGCT	6 cut(s)	21, 42, 65, 110, 156, 551
Alw21I	GWGCWC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	12, 448
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	1 cut(s)	185
ApoI	RAATTY	3 cut(s)	205, 214, 577
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	163, 506
AvaI	CYCGRG	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	112
BccI	CCATC	3 cut(s)	145, 164, 311
BciT130I	CCWGG	2 cut(s)	191, 434
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	509
Bme1390I	CCNGG	2 cut(s)	191, 434
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	6, 188
BmrFI	CCNGG	2 cut(s)	191, 434
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	189, 503
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
BseBI	CCWGG	2 cut(s)	191, 434
BseDI	CCNNGG	2 cut(s)	189, 503
BseGI	GGATG	2 cut(s)	133, 322
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	118, 435
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	283
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	4, 88, 352, 440, 509
Bsp19I	CCATGG	1 cut(s)	503
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	117, 436
BspLI	GGNNCC	2 cut(s)	6, 188
BspPI	GGATC	2 cut(s)	12, 448
BspQI	GCTCTTC	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	189, 503
BssMI	GATC	5 cut(s)	4, 88, 352, 440, 509
BssT1I	CCWWGG	1 cut(s)	503
Bst2UI	CCWGG	2 cut(s)	191, 434
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	98, 104, 444
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	133, 322
BstKTI	GATC	5 cut(s)	7, 91, 355, 443, 512
BstMBI	GATC	5 cut(s)	4, 88, 352, 440, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 369
BstNI	CCWGG	2 cut(s)	191, 434
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	189, 432
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	3 cut(s)	4, 440, 509
BstYI	RGATCY	3 cut(s)	4, 440, 509
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	133, 322
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	4 cut(s)	313, 394, 504, 536
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	98, 104, 444
DpnI	GATC	5 cut(s)	6, 90, 354, 442, 511
DpnII	GATC	5 cut(s)	4, 88, 352, 440, 509
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	110
EcoRI	GAATTC	2 cut(s)	214, 577
EcoRII	CCWGG	2 cut(s)	189, 432
EcoT14I	CCWWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	4 cut(s)	316, 397, 507, 539
FatI	CATG	4 cut(s)	312, 393, 503, 535
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	2 cut(s)	120, 329
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	4 cut(s)	316, 397, 507, 539
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HindIII	AAGCTT	2 cut(s)	40, 549
HinfI	GANTC	1 cut(s)	273
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	163, 506
Hpy166II	GTNNAC	3 cut(s)	310, 347, 404
Hpy188I	TCNGA	4 cut(s)	107, 177, 234, 445
Hpy188III	TCNNGA	2 cut(s)	28, 277
Hpy8I	GTNNAC	3 cut(s)	310, 347, 404
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	3 cut(s)	14, 377, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 369
HpyF3I	CTNAG	3 cut(s)	98, 104, 444
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	316, 397, 507, 539
Ksp22I	TGATCA	1 cut(s)	352
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	4, 88, 352, 440, 509
LguI	GCTCTTC	1 cut(s)	117
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	223, 494
MalI	GATC	5 cut(s)	6, 90, 354, 442, 511
MboI	GATC	5 cut(s)	4, 88, 352, 440, 509
MboII	GAAGA	4 cut(s)	104, 223, 260, 401
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	3 cut(s)	4, 440, 509
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	5 cut(s)	205, 214, 478, 543, 577
MlyI	GAGTC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	7 cut(s)	70, 113, 154, 253, 262, 282, 417
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	309
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	191, 434
MunI	CAATTG	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	191, 434
MwoI	GCNNNNNNNGC	2 cut(s)	162, 369
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	5 cut(s)	4, 88, 352, 440, 509
NlaIII	CATG	4 cut(s)	316, 397, 507, 539
NlaIV	GGNNCC	2 cut(s)	6, 188
NmuCI	GTSAC	2 cut(s)	223, 494
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	367
PciI	ACATGT	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PscI	ACATGT	1 cut(s)	393
PsiI	TTATAA	2 cut(s)	521, 542
Psp124BI	GAGCTC	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	189, 432
PspGI	CCWGG	2 cut(s)	189, 432
PspN4I	GGNNCC	2 cut(s)	6, 188
PspPI	GGNCC	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	367
PsuI	RGATCY	3 cut(s)	4, 440, 509
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	5 cut(s)	4, 88, 352, 440, 509
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	191, 434
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	367
SlaI	CTCGAG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	367
SmoI	CTYRAG	1 cut(s)	367
Sse9I	AATT	5 cut(s)	205, 214, 478, 543, 577
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	2 cut(s)	189, 432
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	368
TasI	AATT	5 cut(s)	205, 214, 478, 543, 577
TatI	WGTACW	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	223, 494
Tsp45I	GTSAC	2 cut(s)	223, 494
TspDTI	ATGAA	1 cut(s)	75
XapI	RAATTY	3 cut(s)	205, 214, 577
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.