Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

3691815 .. 3693283

Gene Structure 1469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGATCAGGAGCACCTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCAGGCACCATCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTTTGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCCTCAGACGTCCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACTAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCCGCGGTGCCGGTATATGAGAGCATGTGTATTGAGGAAGCAAACGTCTATGGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCAGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCAAGTCATGAAATATAAGGGCCCTCAAACCAGCGGGACTAAGCCGTACACCCACACGGATAAGAACATTGTCACCATTCTACACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCGGGGTCATTTATCGCCATGATTGGTGATTCTCTCGATGCATGGACAAATGGTCGACTGCATTGTCCACATCATCGACACCCGATGACTGGAAATGAGGCGAAGTACTCCACTGCATTGTTCTCTTTCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATAATGTCGAGTTTCTTGGATTTTGCTTTTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

314

Amino Acids

35.58

Weight (kDa)

5.95

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	1e-10	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 261	3.5e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AasI	GACNNNNNNGTC	1 cut(s)	714
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	2 cut(s)	65, 274
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	706
AccII	CGCG	1 cut(s)	272
AciI	CCGC	4 cut(s)	100, 270, 272, 534
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 423, 641
AcsI	RAATTY	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	548, 758
AfiI	CCNNNNNNNGG	7 cut(s)	75, 248, 624, 653, 740, 788, 814
AgsI	TTSAA	6 cut(s)	179, 329, 503, 599, 847, 919
AhdI	GACNNNNNGTC	1 cut(s)	702
AjnI	CCWGG	2 cut(s)	61, 465
AluBI	AGCT	5 cut(s)	92, 193, 412, 447, 905
AluI	AGCT	5 cut(s)	92, 193, 412, 447, 905
Alw21I	GWGCWC	3 cut(s)	16, 94, 907
AlwI	GGATC	3 cut(s)	13, 423, 641
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	350, 520
ApaI	GGGCCC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	520, 521
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	565, 689
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	2 cut(s)	65, 274
BanII	GRGCYC	3 cut(s)	94, 524, 907
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	3 cut(s)	16, 94, 907
BccI	CCATC	2 cut(s)	77, 617
BceAI	ACGGC	1 cut(s)	529
BciT130I	CCWGG	2 cut(s)	63, 467
BcnI	CCSGG	1 cut(s)	654
BfaI	CTAG	2 cut(s)	605, 943
BfuAI	ACCTGC	1 cut(s)	779
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	3 cut(s)	63, 467, 654
BmeRI	GACNNNNNGTC	1 cut(s)	702
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	520, 521
BmiI	GGNNCC	3 cut(s)	67, 276, 522
BmrFI	CCNGG	3 cut(s)	63, 467, 654
BmsI	GCATC	2 cut(s)	679, 841
BpiI	GAAGAC	1 cut(s)	926
BplI	GAGNNNNNCTC	3 cut(s)	35, 65, 97
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	41, 476
BpuMI	CCSGG	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	270, 653
Bsc4I	CCNNNNNNNGG	7 cut(s)	75, 248, 624, 653, 740, 788, 814
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	745
BseBI	CCWGG	2 cut(s)	63, 467
BseDI	CCNNGG	2 cut(s)	270, 653
BseGI	GGATG	2 cut(s)	829, 832
BseLI	CCNNNNNNNGG	7 cut(s)	75, 248, 624, 653, 740, 788, 814
BseMII	CTCAG	4 cut(s)	96, 168, 399, 408
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	352, 522
BshNI	GGYRCC	2 cut(s)	65, 274
BsiHKAI	GWGCWC	3 cut(s)	16, 94, 907
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	278, 653
BslFI	GGGAC	3 cut(s)	92, 465, 550
BslI	CCNNNNNNNGG	7 cut(s)	75, 248, 624, 653, 740, 788, 814
BsmFI	GGGAC	3 cut(s)	92, 465, 550
BsnI	GGCC	2 cut(s)	352, 522
BsoBI	CYCGRG	1 cut(s)	93
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	4 cut(s)	16, 94, 524, 907
Bsp143I	GATC	3 cut(s)	5, 415, 633
BspACI	CCGC	4 cut(s)	100, 270, 272, 534
BspANI	GGCC	2 cut(s)	352, 522
BspCNI	CTCAG	4 cut(s)	95, 167, 400, 407
BspFNI	CGCG	1 cut(s)	272
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	67, 276, 522
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	13, 423, 641
BspQI	GCTCTTC	2 cut(s)	183, 822
BspT107I	GGYRCC	2 cut(s)	65, 274
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	270, 653
BssMI	GATC	3 cut(s)	5, 415, 633
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	63, 467
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	108, 183, 822
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstDEI	CTNAG	5 cut(s)	82, 154, 394, 408, 540
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	829, 832
BstFNI	CGCG	1 cut(s)	272
BstKTI	GATC	3 cut(s)	8, 418, 636
BstMBI	GATC	3 cut(s)	5, 415, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
BstNI	CCWGG	2 cut(s)	63, 467
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	3 cut(s)	61, 465, 652
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	352, 522
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	829, 832
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	1 cut(s)	762
BveI	ACCTGC	1 cut(s)	779
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	2 cut(s)	520, 521
Cfr42I	CCGCGG	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	547, 757
CviAII	CATG	6 cut(s)	46, 248, 292, 508, 670, 693
CviQI	GTAC	2 cut(s)	547, 757
DdeI	CTNAG	5 cut(s)	82, 154, 394, 408, 540
DpnI	GATC	3 cut(s)	7, 417, 635
DpnII	GATC	3 cut(s)	5, 415, 633
DrdI	GACNNNNNNGTC	1 cut(s)	714
DriI	GACNNNNNGTC	1 cut(s)	702
DseDI	GACNNNNNNGTC	1 cut(s)	714
Eam1104I	CTCTTC	3 cut(s)	108, 183, 822
Eam1105I	GACNNNNNGTC	1 cut(s)	702
EarI	CTCTTC	3 cut(s)	108, 183, 822
Ecl136II	GAGCTC	2 cut(s)	92, 905
Eco24I	GRGCYC	3 cut(s)	94, 524, 907
Eco53kI	GAGCTC	2 cut(s)	92, 905
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	2 cut(s)	92, 905
EcoO109I	RGGNCCY	2 cut(s)	520, 521
EcoRII	CCWGG	2 cut(s)	61, 465
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	3 cut(s)	94, 524, 907
FaeI	CATG	6 cut(s)	49, 251, 295, 511, 673, 696
FaqI	GGGAC	3 cut(s)	92, 465, 550
FatI	CATG	6 cut(s)	45, 247, 291, 507, 669, 692
FauI	CCCGC	2 cut(s)	277, 527
FblI	GTMKAC	1 cut(s)	706
FokI	GGATG	2 cut(s)	819, 836
FriOI	GRGCYC	3 cut(s)	94, 524, 907
FspBI	CTAG	2 cut(s)	605, 943
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	352, 522
HapII	CCGG	2 cut(s)	278, 653
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	49, 251, 295, 511, 673, 696
HincII	GTYRAC	2 cut(s)	486, 707
HindII	GTYRAC	2 cut(s)	486, 707
HinfI	GANTC	3 cut(s)	80, 96, 680
HpaII	CCGG	2 cut(s)	278, 653
HphI	GGTGA	2 cut(s)	565, 689
Hpy166II	GTNNAC	4 cut(s)	486, 549, 707, 719
Hpy188I	TCNGA	6 cut(s)	157, 164, 397, 409, 889, 900
Hpy188III	TCNNGA	3 cut(s)	9, 508, 686
Hpy8I	GTNNAC	4 cut(s)	486, 549, 707, 719
HpyAV	CCTTC	4 cut(s)	400, 506, 593, 657
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	3 cut(s)	159, 228, 312
HpyCH4V	TGCA	6 cut(s)	49, 107, 613, 692, 712, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
HpyF3I	CTNAG	5 cut(s)	82, 154, 394, 408, 540
HpySE526I	ACGT	3 cut(s)	159, 228, 312
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	49, 251, 295, 511, 673, 696
KspI	CCGCGG	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	5, 415, 633
LguI	GCTCTTC	2 cut(s)	183, 822
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	2 cut(s)	679, 841
MaeI	CTAG	2 cut(s)	605, 943
MaeII	ACGT	3 cut(s)	159, 228, 312
MaeIII	GTNAC	2 cut(s)	571, 791
MalI	GATC	3 cut(s)	7, 417, 635
MboI	GATC	3 cut(s)	5, 415, 633
MboII	GAAGA	5 cut(s)	125, 200, 491, 839, 931
MhlI	GDGCHC	4 cut(s)	16, 94, 524, 907
MluCI	AATT	3 cut(s)	218, 367, 420
MlyI	GAGTC	2 cut(s)	74, 105
Mph1103I	ATGCAT	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	2 cut(s)	141, 642
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	272, 534
MspI	CCGG	2 cut(s)	278, 653
MspR9I	CCNGG	3 cut(s)	63, 467, 654
MvaI	CCWGG	2 cut(s)	63, 467
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
NciI	CCSGG	1 cut(s)	654
NdeII	GATC	3 cut(s)	5, 415, 633
NlaIII	CATG	6 cut(s)	49, 251, 295, 511, 673, 696
NlaIV	GGNNCC	3 cut(s)	67, 276, 522
NmuCI	GTSAC	1 cut(s)	571
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	507
PciSI	GCTCTTC	2 cut(s)	183, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	74, 104
PpsI	GAGTC	2 cut(s)	74, 104
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	2 cut(s)	94, 907
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 465
PspGI	CCWGG	2 cut(s)	61, 465
PspN4I	GGNNCC	3 cut(s)	67, 276, 522
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	520, 521
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	893
RsaI	GTAC	2 cut(s)	548, 758
RsaNI	GTAC	2 cut(s)	547, 757
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	2 cut(s)	94, 907
SacII	CCGCGG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	705
SapI	GCTCTTC	2 cut(s)	183, 822
SaqAI	TTAA	2 cut(s)	141, 642
Sau3AI	GATC	3 cut(s)	5, 415, 633
Sau96I	GGNCC	2 cut(s)	520, 521
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	2 cut(s)	74, 105
ScrFI	CCNGG	3 cut(s)	63, 467, 654
SduI	GDGCHC	4 cut(s)	16, 94, 524, 907
SfaNI	GCATC	2 cut(s)	679, 841
Sfr274I	CTCGAG	1 cut(s)	93
Sfr303I	CCGCGG	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	56, 93, 455
SmoI	CTYRAG	3 cut(s)	56, 93, 455
Sse9I	AATT	3 cut(s)	218, 367, 420
SsiI	CCGC	4 cut(s)	100, 270, 272, 534
SspMI	CTAG	2 cut(s)	605, 943
SstI	GAGCTC	2 cut(s)	94, 907
StyD4I	CCNGG	3 cut(s)	61, 465, 652
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	3 cut(s)	162, 231, 315
TasI	AATT	3 cut(s)	218, 367, 420
TatI	WGTACW	1 cut(s)	756
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	2 cut(s)	141, 642
Tru9I	TTAA	2 cut(s)	141, 642
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	236, 374, 524, 840
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	1 cut(s)	769
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	605, 943
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	758
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.