Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

267049 .. 268479

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000595.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgggatcaggagcacctctcaaacttcccaccatagatttctccatgcaaaacctcaaaccaggcaccatcgagtgggactcagttagagctcgagtccgctttgcacttgaagagtatggttgcttcgaggctttgtttaacaaagttccttcagacgttcgaaaagctaaattgcgaaacgtttctcaaaagccctttcttggctatgtcgggcaataccccgtagtgccggtatatgacagcatttgtattgaggaagcaaacgtctatggacaagttcagagtttcacaaacattttttggcctcaacaaaacccaaattttagcaaaactgttcattccttctcggagaaactatctgagctggatcaaattataaggagaatgattttggagagcttgggacttgagaaatacctggaggaacacatagggtcaacaaactaccttcttcaagtcatgaaatataagggccctcaaaccagcgggactaagccgtacacccacacggataagaacattgtcaccattatacaccaaaaccgagttgaaggactagaggtacaaaccaaagatgggaaatggatcaatgttaaatcttcgccggagtcatttatcgccatgattggtgattctctcgatgcatggacaaatggtcgactgcattgtccacatcatcgacacccgatgactggaaatgaggcgaagtactccactgcattgttgtctttcccaaaagcaggatacataataaaagccccagaggaggttgtggatgaagagcatcctctgcttttcatgccattcgataatgtcgagtttcttggatttttcttttcagaggctggtcagagagctcaatctgctttgaagaattattgtggtgtcgaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

299

Amino Acids

33.93

Weight (kDa)

6.32

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AasI	GACNNNNNNGTC	1 cut(s)	669
AccB1I	GGYRCC	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	661
AciI	CCGC	2 cut(s)	100, 489
AclI	AACGTT	1 cut(s)	183
AclWI	GGATC	3 cut(s)	13, 378, 596
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	503, 567, 713
AfiI	CCNNNNNNNGG	6 cut(s)	75, 203, 579, 695, 743, 769
AgsI	TTSAA	4 cut(s)	113, 458, 554, 874
AhdI	GACNNNNNGTC	1 cut(s)	657
AjnI	CCWGG	2 cut(s)	61, 420
AluBI	AGCT	5 cut(s)	92, 170, 367, 402, 860
AluI	AGCT	5 cut(s)	92, 170, 367, 402, 860
Alw21I	GWGCWC	3 cut(s)	16, 94, 862
AlwI	GGATC	3 cut(s)	13, 378, 596
AlwNI	CAGNNNCTG	1 cut(s)	848
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	305, 475
ApaI	GGGCCC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	475, 476
AsuHPI	GGTGA	2 cut(s)	520, 644
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	3 cut(s)	94, 479, 862
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	3 cut(s)	16, 94, 862
BccI	CCATC	2 cut(s)	77, 572
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	2 cut(s)	63, 422
BciVI	GTATCC	1 cut(s)	740
BfaI	CTAG	2 cut(s)	560, 898
BfuI	GTATCC	1 cut(s)	740
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	2 cut(s)	63, 422
BmeRI	GACNNNNNGTC	1 cut(s)	657
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	2 cut(s)	475, 476
BmiI	GGNNCC	2 cut(s)	67, 477
BmrFI	CCNGG	2 cut(s)	63, 422
BmsI	GCATC	2 cut(s)	634, 796
BplI	GAGNNNNNCTC	3 cut(s)	35, 65, 97
BpmI	CTGGAG	1 cut(s)	443
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 203, 579, 695, 743, 769
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	700
BseBI	CCWGG	2 cut(s)	63, 422
BseGI	GGATG	2 cut(s)	784, 787
BseLI	CCNNNNNNNGG	6 cut(s)	75, 203, 579, 695, 743, 769
BseMII	CTCAG	2 cut(s)	96, 354
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	782
BseSI	GKGCMC	1 cut(s)	479
BshFI	GGCC	2 cut(s)	307, 477
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	3 cut(s)	16, 94, 862
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	233, 608
BslFI	GGGAC	3 cut(s)	92, 420, 505
BslI	CCNNNNNNNGG	6 cut(s)	75, 203, 579, 695, 743, 769
BsmFI	GGGAC	3 cut(s)	92, 420, 505
BsnI	GGCC	2 cut(s)	307, 477
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	4 cut(s)	16, 94, 479, 862
Bsp143I	GATC	3 cut(s)	5, 370, 588
BspACI	CCGC	2 cut(s)	100, 489
BspANI	GGCC	2 cut(s)	307, 477
BspCNI	CTCAG	2 cut(s)	95, 355
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	67, 477
BspPI	GGATC	3 cut(s)	13, 378, 596
BspQI	GCTCTTC	1 cut(s)	777
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	700
BssAI	RCCGGY	1 cut(s)	232
BssMI	GATC	3 cut(s)	5, 370, 588
Bst2UI	CCWGG	2 cut(s)	63, 422
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	2 cut(s)	108, 777
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	82, 363, 495
BstF5I	GGATG	2 cut(s)	784, 787
BstKTI	GATC	3 cut(s)	8, 373, 591
BstMBI	GATC	3 cut(s)	5, 370, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	793, 802, 866
BstNI	CCWGG	2 cut(s)	63, 422
BstSCI	CCNGG	2 cut(s)	61, 420
BstSLI	GKGCMC	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	2 cut(s)	307, 477
BtsCI	GGATG	2 cut(s)	784, 787
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	717
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	1 cut(s)	462
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	475, 476
Csp6I	GTAC	3 cut(s)	502, 566, 712
CviAII	CATG	5 cut(s)	46, 463, 625, 648, 802
CviQI	GTAC	3 cut(s)	502, 566, 712
DdeI	CTNAG	3 cut(s)	82, 363, 495
DpnI	GATC	3 cut(s)	7, 372, 590
DpnII	GATC	3 cut(s)	5, 370, 588
DrdI	GACNNNNNNGTC	1 cut(s)	669
DriI	GACNNNNNGTC	1 cut(s)	657
DseDI	GACNNNNNNGTC	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	108, 777
Eam1105I	GACNNNNNGTC	1 cut(s)	657
EarI	CTCTTC	2 cut(s)	108, 777
Ecl136II	GAGCTC	2 cut(s)	92, 860
Eco24I	GRGCYC	3 cut(s)	94, 479, 862
Eco53kI	GAGCTC	2 cut(s)	92, 860
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	2 cut(s)	92, 860
EcoO109I	RGGNCCY	2 cut(s)	475, 476
EcoRII	CCWGG	2 cut(s)	61, 420
EcoT22I	ATGCAT	1 cut(s)	649
EcoT38I	GRGCYC	3 cut(s)	94, 479, 862
FaeI	CATG	5 cut(s)	49, 466, 628, 651, 805
FaqI	GGGAC	3 cut(s)	92, 420, 505
FatI	CATG	5 cut(s)	45, 462, 624, 647, 801
FauI	CCCGC	1 cut(s)	482
FblI	GTMKAC	1 cut(s)	661
FokI	GGATG	2 cut(s)	774, 791
FriOI	GRGCYC	3 cut(s)	94, 479, 862
FspBI	CTAG	2 cut(s)	560, 898
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	307, 477
HapII	CCGG	2 cut(s)	233, 608
Hin1II	CATG	5 cut(s)	49, 466, 628, 651, 805
HincII	GTYRAC	2 cut(s)	441, 662
HindII	GTYRAC	2 cut(s)	441, 662
HinfI	GANTC	4 cut(s)	80, 96, 611, 635
HpaII	CCGG	2 cut(s)	233, 608
HphI	GGTGA	2 cut(s)	520, 644
Hpy166II	GTNNAC	4 cut(s)	441, 504, 662, 674
Hpy188I	TCNGA	6 cut(s)	157, 285, 352, 364, 844, 855
Hpy188III	TCNNGA	3 cut(s)	9, 463, 641
Hpy8I	GTNNAC	4 cut(s)	441, 504, 662, 674
HpyAV	CCTTC	4 cut(s)	162, 355, 461, 548
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	3 cut(s)	159, 183, 267
HpyCH4V	TGCA	5 cut(s)	49, 107, 647, 667, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	793, 802, 866
HpyF3I	CTNAG	3 cut(s)	82, 363, 495
HpySE526I	ACGT	3 cut(s)	159, 183, 267
Hsp92II	CATG	5 cut(s)	49, 466, 628, 651, 805
Kzo9I	GATC	3 cut(s)	5, 370, 588
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	2 cut(s)	634, 796
MaeI	CTAG	2 cut(s)	560, 898
MaeII	ACGT	3 cut(s)	159, 183, 267
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	7, 372, 590
MboI	GATC	3 cut(s)	5, 370, 588
MboII	GAAGA	5 cut(s)	125, 446, 594, 794, 886
MhlI	GDGCHC	4 cut(s)	16, 94, 479, 862
MluCI	AATT	4 cut(s)	173, 322, 375, 877
MlyI	GAGTC	3 cut(s)	74, 105, 620
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	2 cut(s)	141, 597
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	2 cut(s)	233, 608
MspR9I	CCNGG	2 cut(s)	63, 422
MvaI	CCWGG	2 cut(s)	63, 422
MwoI	GCNNNNNNNGC	3 cut(s)	793, 802, 866
NdeII	GATC	3 cut(s)	5, 370, 588
NlaIII	CATG	5 cut(s)	49, 466, 628, 651, 805
NlaIV	GGNNCC	2 cut(s)	67, 477
NmuCI	GTSAC	1 cut(s)	526
NsiI	ATGCAT	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	3 cut(s)	74, 104, 619
PpsI	GAGTC	3 cut(s)	74, 104, 619
PsiI	TTATAA	1 cut(s)	380
Psp124BI	GAGCTC	2 cut(s)	94, 862
Psp1406I	AACGTT	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	61, 420
PspGI	CCWGG	2 cut(s)	61, 420
PspN4I	GGNNCC	2 cut(s)	67, 477
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	2 cut(s)	475, 476
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	848
RsaI	GTAC	3 cut(s)	503, 567, 713
RsaNI	GTAC	3 cut(s)	502, 566, 712
SacI	GAGCTC	2 cut(s)	94, 862
SalI	GTCGAC	1 cut(s)	660
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	141, 597
Sau3AI	GATC	3 cut(s)	5, 370, 588
Sau96I	GGNCC	2 cut(s)	475, 476
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	74, 105, 620
ScrFI	CCNGG	2 cut(s)	63, 422
SduI	GDGCHC	4 cut(s)	16, 94, 479, 862
SfaNI	GCATC	2 cut(s)	634, 796
Sfr274I	CTCGAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	93, 410
SmoI	CTYRAG	2 cut(s)	93, 410
Sse9I	AATT	4 cut(s)	173, 322, 375, 877
SsiI	CCGC	2 cut(s)	100, 489
SspMI	CTAG	2 cut(s)	560, 898
SstI	GAGCTC	2 cut(s)	94, 862
StyD4I	CCNGG	2 cut(s)	61, 420
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	3 cut(s)	162, 186, 270
TasI	AATT	4 cut(s)	173, 322, 375, 877
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	1 cut(s)	635
Tru1I	TTAA	2 cut(s)	141, 597
Tru9I	TTAA	2 cut(s)	141, 597
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	526
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	329, 479, 790, 795
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	724
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	2 cut(s)	560, 898
ZrmI	AGTACT	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.