Rh4DG058700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000834
Physical Location & Seq
Reverse (-)
8944508 .. 8955545
11038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG058700.1

Sequence Viewer

Length: 294 bp
ATGGCATCTTCAATGCAGCATAAACCACTCAGTTGTGGATGCATGGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCATCGAGTGAAGCACTGCGGGGACAAGACTCGATACTCACTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTACCCAAAGAGCTAGTAGACGACAGCCACCCACTCCTCTACAACCAGTTCGACAGTCGTGGCTTCATAAGATTTTACACCACAGAGGAGGCCAAGAAGGCAAAGTCACCCATCAAAGCCTATTGCGGTGTCAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

97

Amino Acids

11.12

Weight (kDa)

9.35

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 2 cut(s) 96, 279
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 2 cut(s) 71, 166
AluI AGCT 2 cut(s) 71, 166
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 252
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 87, 272
BfaI CTAG 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 2 cut(s) 14, 29
BmuI ACTGGG 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 123, 199
Bse3DI GCAATG 1 cut(s) 61
BseGI GGATG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 43
BseNI ACTGG 2 cut(s) 123, 199
BseRI GAGGAG 2 cut(s) 179, 254
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 245
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 245
BspACI CCGC 2 cut(s) 96, 279
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 123, 199
Bst4CI ACNGT 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 116
Cac8I GCNNGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 71, 166, 180, 216, 245, 272
CviKI_1 RGCY 6 cut(s) 71, 166, 180, 216, 245, 272
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 29
EcoT22I ATGCAT 1 cut(s) 44
FaeI CATG 1 cut(s) 46
FaiI YATR 4 cut(s) 21, 44, 49, 221
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 129, 172
Hpy8I GTNNAC 2 cut(s) 129, 172
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 16, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 2 cut(s) 104, 212
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 2 cut(s) 14, 29
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 258
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 3 cut(s) 200, 232, 235
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 44
PkrI GCNGC 1 cut(s) 18
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 17
SchI GAGTC 1 cut(s) 100
SetI ASST 3 cut(s) 73, 134, 168
SfaNI GCATC 2 cut(s) 14, 29
SsiI CCGC 2 cut(s) 96, 279
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 82, 109, 204
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 98, 123
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 2 cut(s) 98, 123
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.