Rh5DG355100

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
52312874 .. 52323125
10252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG355100.1

Sequence Viewer

Length: 336 bp
ATGGACCATAACACAGGCGGACGTTGGTCCACAGAAAACTCTTCAGTGTACAAGATAGTTTTGAGGCGTTCCATTATACGTGCCGTGCGCTACTGGTTTACTAGAATAAAAGCATGCCAGCATCGAGTGAAGCACTGCGGAGACAAGACTCGATACTCGCTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTGCCCAAAGAGTTAGTAGACGACAGCCACCCACTCCTCTACAAGCTGTTCGACAGTCGTGGTTTCATAAGATTTTACACCACACCGGAGGCTAAGAAGTCAGAGTCGCCCATCAAAGCGTACTGCGGTGTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

13.0

Weight (kDa)

9.92

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 18, 138, 321
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 50, 317
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 135
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 4, 27
AvaII GGWCC 2 cut(s) 4, 27
BaeGI GKGCMC 1 cut(s) 201
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 2 cut(s) 102, 334
Bme18I GGWCC 2 cut(s) 4, 27
BmgT120I GGNCC 2 cut(s) 4, 27
BmsI GCATC 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 48
BspACI CCGC 3 cut(s) 18, 138, 321
BsrGI TGTACA 1 cut(s) 48
BsrI ACTGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 1 cut(s) 288
BstHHI GCGC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 117
BstPAI GACNNNNGTC 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 51, 133
Cac8I GCNNGC 2 cut(s) 115, 119
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 4, 27
Csp6I GTAC 2 cut(s) 49, 316
CviAII CATG 1 cut(s) 114
CviJI RGCY 3 cut(s) 222, 241, 287
CviKI_1 RGCY 3 cut(s) 222, 241, 287
CviQI GTAC 2 cut(s) 49, 316
DdeI CTNAG 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
EciI GGCGGA 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 4, 27
Eco57I CTGAAG 1 cut(s) 27
FaeI CATG 1 cut(s) 117
FaiI YATR 4 cut(s) 9, 77, 115, 263
FatI CATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 213
FspBI CTAG 2 cut(s) 102, 334
GlaI GCGC 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 164
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 2 cut(s) 148, 299
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 5 cut(s) 30, 49, 99, 171, 214
Hpy188I TCNGA 1 cut(s) 298
Hpy8I GTNNAC 5 cut(s) 30, 49, 99, 171, 214
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 3 cut(s) 22, 79, 173
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 3 cut(s) 22, 79, 173
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 79, 131, 146, 294
LweI GCATC 1 cut(s) 130
MaeI CTAG 2 cut(s) 102, 334
MaeII ACGT 3 cut(s) 22, 79, 173
MboII GAAGA 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 201
MlyI GAGTC 2 cut(s) 142, 308
MnlI CCTC 3 cut(s) 57, 242, 277
MseI TTAA 2 cut(s) 177, 327
MspI CCGG 1 cut(s) 281
NlaIII CATG 1 cut(s) 117
NspI RCATGY 1 cut(s) 117
PaeI GCATGC 1 cut(s) 117
PleI GAGTC 2 cut(s) 142, 307
PpsI GAGTC 2 cut(s) 142, 307
Ppu21I YACGTR 1 cut(s) 80
PshAI GACNNNNGTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 4, 27
RsaI GTAC 2 cut(s) 50, 317
RsaNI GTAC 2 cut(s) 49, 316
SaqAI TTAA 2 cut(s) 177, 327
Sau96I GGNCC 2 cut(s) 4, 27
SchI GAGTC 2 cut(s) 142, 308
SduI GDGCHC 1 cut(s) 201
SetI ASST 4 cut(s) 25, 82, 176, 243
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 2 cut(s) 4, 27
SphI GCATGC 1 cut(s) 117
SsiI CCGC 3 cut(s) 18, 138, 321
SspMI CTAG 2 cut(s) 102, 334
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 3 cut(s) 25, 82, 176
TaqI TCGA 3 cut(s) 124, 151, 246
TatI WGTACW 1 cut(s) 48
Tru1I TTAA 2 cut(s) 177, 327
Tru9I TTAA 2 cut(s) 177, 327
TscAI CASTG 2 cut(s) 51, 140
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 2 cut(s) 51, 140
VpaK11BI GGWCC 2 cut(s) 4, 27
XceI RCATGY 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 102, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.