Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

85856422 .. 85857888

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGATCAGAAACACCTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCGGGCACCACCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTTTGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGACGTTCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCCATGGTGCCCCTATATGAGAGCATGGGTATTGAGGAAGCAACCGTCGATCGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGGTTAGTACACTCTTTCCCCCGACTGTATATAGTGGCAACAACAAATATATCTGCTATATTATCTTGTCGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTTATGAAATATAAGGGCCCTCAAACCAGCGAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACCATTTTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTCAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGATAGCTCAATCTGCTTTGAAGACTTACTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

339

Amino Acids

38.72

Weight (kDa)

6.28

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	3.4e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	190 - 284	1.8e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	854
AccB1I	GGYRCC	2 cut(s)	65, 274
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	781
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 492, 716
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	381, 833
AfiI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 699, 863, 889
AgsI	TTSAA	5 cut(s)	179, 329, 674, 922, 994
AhdI	GACNNNNNGTC	1 cut(s)	777
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	92, 193, 481, 516, 613, 980
AluI	AGCT	6 cut(s)	92, 193, 481, 516, 613, 980
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	3 cut(s)	13, 492, 716
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	3 cut(s)	350, 589, 616
ApaI	GGGCCC	1 cut(s)	593
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	589, 590, 616
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	640
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	3 cut(s)	68, 279, 593
BanI	GGYRCC	2 cut(s)	65, 274
BanII	GRGCYC	2 cut(s)	94, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	1001
Bbv12I	GWGCWC	1 cut(s)	94
BccI	CCATC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	3 cut(s)	680, 828, 1018
BfuAI	ACCTGC	1 cut(s)	854
Bme1390I	CCNGG	2 cut(s)	63, 536
BmeRI	GACNNNNNGTC	1 cut(s)	777
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	3 cut(s)	589, 590, 616
BmiI	GGNNCC	3 cut(s)	67, 276, 591
BmrFI	CCNGG	2 cut(s)	63, 536
BmsI	GCATC	1 cut(s)	916
BpiI	GAAGAC	1 cut(s)	1001
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	557
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 545
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 699, 863, 889
Bse1I	ACTGG	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	904, 907
BseLI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 699, 863, 889
BseMII	CTCAG	2 cut(s)	96, 468
BseNI	ACTGG	1 cut(s)	844
BseRI	GAGGAG	1 cut(s)	902
BseSI	GKGCMC	3 cut(s)	68, 279, 593
BseYI	CCCAGC	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	352, 591, 618
BshNI	GGYRCC	2 cut(s)	65, 274
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	62, 728, 816
BslFI	GGGAC	2 cut(s)	92, 534
BslI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 699, 863, 889
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	92, 534
BsnI	GGCC	3 cut(s)	352, 591, 618
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	4 cut(s)	68, 94, 279, 593
Bsp143I	GATC	5 cut(s)	5, 316, 484, 708, 931
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	352, 591, 618
BspCNI	CTCAG	2 cut(s)	95, 469
BspLI	GGNNCC	3 cut(s)	67, 276, 591
BspMI	ACCTGC	1 cut(s)	854
BspPI	GGATC	3 cut(s)	13, 492, 716
BspQI	GCTCTTC	2 cut(s)	183, 897
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	65, 274
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	5 cut(s)	5, 316, 484, 708, 931
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	4 cut(s)	313, 399, 451, 1004
Bst6I	CTCTTC	3 cut(s)	108, 183, 897
BstAPI	GCANNNNNTGC	1 cut(s)	913
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	82, 477, 609
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	904, 907
BstKTI	GATC	5 cut(s)	8, 319, 487, 711, 934
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	5 cut(s)	5, 316, 484, 708, 931
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	913, 922, 986
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	61, 534
BstSLI	GKGCMC	3 cut(s)	68, 279, 593
BstV2I	GAAGAC	1 cut(s)	1001
BsuRI	GGCC	3 cut(s)	352, 591, 618
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	904, 907
BtsIMutI	CAGTG	1 cut(s)	837
BveI	ACCTGC	1 cut(s)	854
CaiI	CAGNNNCTG	1 cut(s)	968
Cfr13I	GGNCC	3 cut(s)	589, 590, 616
Csp6I	GTAC	2 cut(s)	380, 832
CviAII	CATG	7 cut(s)	46, 248, 271, 292, 745, 768, 935
CviQI	GTAC	2 cut(s)	380, 832
DdeI	CTNAG	3 cut(s)	82, 477, 609
DpnI	GATC	5 cut(s)	7, 318, 486, 710, 933
DpnII	GATC	5 cut(s)	5, 316, 484, 708, 931
DraIII	CACNNNGTG	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	777
Eam1104I	CTCTTC	3 cut(s)	108, 183, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	777
EarI	CTCTTC	3 cut(s)	108, 183, 897
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	94, 593
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	589, 590
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	769
EcoT38I	GRGCYC	2 cut(s)	94, 593
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	7 cut(s)	49, 251, 274, 295, 748, 771, 938
FaqI	GGGAC	2 cut(s)	92, 534
FatI	CATG	7 cut(s)	45, 247, 270, 291, 744, 767, 934
FblI	GTMKAC	1 cut(s)	781
FokI	GGATG	2 cut(s)	894, 911
FriOI	GRGCYC	2 cut(s)	94, 593
FspBI	CTAG	3 cut(s)	680, 828, 1018
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	3 cut(s)	352, 591, 618
HapII	CCGG	3 cut(s)	62, 728, 816
Hin1II	CATG	7 cut(s)	49, 251, 274, 295, 748, 771, 938
HincII	GTYRAC	2 cut(s)	555, 782
HindII	GTYRAC	2 cut(s)	555, 782
HinfI	GANTC	4 cut(s)	80, 96, 731, 755
HpaII	CCGG	3 cut(s)	62, 728, 816
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	3 cut(s)	382, 555, 782
Hpy188I	TCNGA	6 cut(s)	10, 157, 466, 478, 964, 975
Hpy8I	GTNNAC	3 cut(s)	382, 555, 782
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	5 cut(s)	162, 469, 575, 668, 732
HpyCH4III	ACNGT	4 cut(s)	313, 399, 451, 1004
HpyCH4IV	ACGT	2 cut(s)	159, 228
HpyCH4V	TGCA	5 cut(s)	49, 107, 658, 688, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	913, 922, 986
HpyF3I	CTNAG	3 cut(s)	82, 477, 609
HpySE526I	ACGT	2 cut(s)	159, 228
Hsp92II	CATG	7 cut(s)	49, 251, 274, 295, 748, 771, 938
Kzo9I	GATC	5 cut(s)	5, 316, 484, 708, 931
LguI	GCTCTTC	2 cut(s)	183, 897
LweI	GCATC	1 cut(s)	916
MaeI	CTAG	3 cut(s)	680, 828, 1018
MaeII	ACGT	2 cut(s)	159, 228
MaeIII	GTNAC	2 cut(s)	646, 866
MalI	GATC	5 cut(s)	7, 318, 486, 710, 933
MboI	GATC	5 cut(s)	5, 316, 484, 708, 931
MboII	GAAGA	5 cut(s)	125, 200, 560, 914, 1006
MhlI	GDGCHC	4 cut(s)	68, 94, 279, 593
MluCI	AATT	3 cut(s)	218, 367, 489
MlyI	GAGTC	3 cut(s)	74, 105, 740
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	3 cut(s)	62, 728, 816
MspR9I	CCNGG	2 cut(s)	63, 536
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	913, 922, 986
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	5 cut(s)	5, 316, 484, 708, 931
NlaIII	CATG	7 cut(s)	49, 251, 274, 295, 748, 771, 938
NlaIV	GGNNCC	3 cut(s)	67, 276, 591
NmuCI	GTSAC	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	93
PciSI	GCTCTTC	2 cut(s)	183, 897
PcsI	WCGNNNNNNNCGW	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	755
PflMI	CCANNNNNTGG	1 cut(s)	75
Ple19I	CGATCG	1 cut(s)	319
PleI	GAGTC	3 cut(s)	74, 104, 739
PpsI	GAGTC	3 cut(s)	74, 104, 739
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	94
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	67, 276, 591
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	3 cut(s)	589, 590, 616
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	968
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	381, 833
RsaNI	GTAC	2 cut(s)	380, 832
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	780
SapI	GCTCTTC	2 cut(s)	183, 897
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	5 cut(s)	5, 316, 484, 708, 931
Sau96I	GGNCC	3 cut(s)	589, 590, 616
SchI	GAGTC	3 cut(s)	74, 105, 740
ScrFI	CCNGG	2 cut(s)	63, 536
SduI	GDGCHC	4 cut(s)	68, 94, 279, 593
SfaNI	GCATC	1 cut(s)	916
Sfr274I	CTCGAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	56, 93, 524
SmoI	CTYRAG	3 cut(s)	56, 93, 524
Sse9I	AATT	3 cut(s)	218, 367, 489
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	680, 828, 1018
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	61, 534
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	313, 399, 451, 1004
TaiI	ACGT	2 cut(s)	162, 231
TasI	AATT	3 cut(s)	218, 367, 489
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	1 cut(s)	646
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	4 cut(s)	236, 443, 593, 915
TspRI	CASTG	1 cut(s)	844
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	781
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	680, 828, 1018
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.