Rh1DG272100

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000834
Physical Location & Seq
Reverse (-)
49239970 .. 49253550
13581 bp
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UTR
Exon/CDS
Intron
Rh1DG272100.1

Sequence Viewer

Length: 327 bp
ATGACAGTGGAGGCTAAGGAGGCGTTGTGGCCGGTGGAGAATGTGGCCATCAAATTCCAACTAAACATGCTGCAGAAAGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCATCGAGTGAAGCACTGCGGGGACAAGACTCGATACTCACTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTACCTAAAGAGCTAGTAGACGACAGCCACCCACTCCTCTACAACCAGTTCGATAGTCGTGGCTTCATAAGATTTTACACCACAGAGGAGGCCAAGAAGGCAAAGTCACCCATCAAAGCCTATTGCGGTGTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

9.35

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AciI CCGC 2 cut(s) 129, 312
AcoI YGGCCR 2 cut(s) 29, 45
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 189
AluBI AGCT 2 cut(s) 104, 199
AluI AGCT 2 cut(s) 104, 199
AoxI GGCC 3 cut(s) 29, 45, 276
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 285
BalI TGGCCA 1 cut(s) 47
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 56, 120, 305
BfaI CTAG 2 cut(s) 200, 325
BfmI CTRYAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 284
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 156, 232
Bse3DI GCAATG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 156, 232
BseRI GAGGAG 2 cut(s) 212, 287
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 3 cut(s) 31, 47, 278
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 31, 47, 278
BspACI CCGC 2 cut(s) 129, 312
BspANI GGCC 3 cut(s) 31, 47, 278
BspMAI CTGCAG 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 2 cut(s) 156, 232
BssAI RCCGGY 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 20, 284
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 57
BsuRI GGCC 3 cut(s) 31, 47, 278
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 3 cut(s) 12, 124, 149
Cac8I GCNNGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 31
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 14, 31, 47, 104, 199, 213, 249, 278, 305
CviKI_1 RGCY 9 cut(s) 14, 31, 47, 104, 199, 213, 249, 278, 305
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 15
EaeI YGGCCR 2 cut(s) 29, 45
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 82, 254
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 122
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 200, 325
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 3 cut(s) 31, 47, 278
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 102
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 2 cut(s) 162, 205
Hpy8I GTNNAC 2 cut(s) 162, 205
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 284
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 70
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 45, 137, 245
Lsp1109I GCAGC 1 cut(s) 57
MaeI CTAG 2 cut(s) 200, 325
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 5 cut(s) 4, 13, 233, 265, 268
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 2 cut(s) 168, 318
Msp20I TGGCCA 1 cut(s) 47
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 20, 284
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 1 cut(s) 70
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 168, 318
SatI GCNGC 1 cut(s) 71
SchI GAGTC 1 cut(s) 133
SetI ASST 4 cut(s) 106, 167, 193, 201
SfcI CTRYAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 53
SsiI CCGC 2 cut(s) 129, 312
SspMI CTAG 2 cut(s) 200, 325
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 115, 142, 237
TasI AATT 1 cut(s) 53
Tru1I TTAA 2 cut(s) 168, 318
Tru9I TTAA 2 cut(s) 168, 318
TscAI CASTG 3 cut(s) 12, 131, 156
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 3 cut(s) 12, 131, 156
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 2 cut(s) 200, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.