Rh5DG142300

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
14558260 .. 14563793
5534 bp
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UTR
Exon/CDS
Intron
Rh5DG142300.1

Sequence Viewer

Length: 228 bp
ATGCAGCTCAAGCCTTCACCAACCTCATGTGGCCTCAAGGGAACCCTGCGTTTTGAGGAGGAGTCGATAATCCAACCGCAAAATGAGCTTGTAGACATGGAGCATCCTCTGCTGTATCGGCCATTCATACTCGCCGGATTCTTTAAGTACATTACCACCAATATTTATTCTCCTTCTGATAATCCGCTAAGAAATTATGCTGGAATTGAACTAGTACTGCATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

5.52

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 93
AciI CCGC 2 cut(s) 77, 185
AcoI YGGCCR 1 cut(s) 119
AfaI GTAC 2 cut(s) 149, 216
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 211
AluBI AGCT 2 cut(s) 7, 88
AluI AGCT 2 cut(s) 7, 88
AoxI GGCC 2 cut(s) 31, 119
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 9
BbvI GCAGC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 43
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 20
BseGI GGATG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 71, 74
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 33, 121
BsiSI CCGG 1 cut(s) 135
BsnI GGCC 2 cut(s) 33, 121
BspACI CCGC 2 cut(s) 77, 185
BspANI GGCC 2 cut(s) 33, 121
BspLI GGNNCC 1 cut(s) 43
BstAPI GCANNNNNTGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 10, 85, 109, 118
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 33, 121
BtsCI GGATG 1 cut(s) 103
Csp6I GTAC 2 cut(s) 148, 215
CviAII CATG 2 cut(s) 27, 97
CviJI RGCY 5 cut(s) 7, 13, 33, 88, 121
CviKI_1 RGCY 5 cut(s) 7, 13, 33, 88, 121
CviQI GTAC 2 cut(s) 148, 215
DdeI CTNAG 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 119
FaeI CATG 2 cut(s) 30, 100
FaiI YATR 5 cut(s) 28, 98, 128, 198, 222
FatI CATG 2 cut(s) 26, 96
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 33, 121
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 30, 100
HinfI GANTC 2 cut(s) 62, 138
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 24, 183
HpyCH4V TGCA 2 cut(s) 4, 220
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 85, 109, 118
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 2 cut(s) 30, 100
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 59, 148, 186
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 212
MluCI AATT 3 cut(s) 193, 204, 223
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 5 cut(s) 34, 44, 49, 52, 117
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 10, 85, 109, 118
NlaIII CATG 2 cut(s) 30, 100
NlaIV GGNNCC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 43
RsaI GTAC 2 cut(s) 149, 216
RsaNI GTAC 2 cut(s) 148, 215
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 5
ScaI AGTACT 1 cut(s) 216
SchI GAGTC 1 cut(s) 71
SetI ASST 3 cut(s) 9, 26, 90
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 8, 35
SmoI CTYRAG 2 cut(s) 8, 35
SpeI ACTAGT 1 cut(s) 211
Sse9I AATT 3 cut(s) 193, 204, 223
SsiI CCGC 2 cut(s) 77, 185
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 212
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 193, 204, 223
TatI WGTACW 2 cut(s) 147, 214
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 1 cut(s) 212
ZrmI AGTACT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.