Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

14270391 .. 14270900

Gene Structure 510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG153700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAGTACTACAAAGTCCCCACTAGTACCCAATCTGACGACAAAAACACAGCATCATCGGCTGTCGTCGGTCAGTCGCCTCACACAGACAATCGTTTCATAACAGTTCTTGACCAGATTAACCAAGTGCAAGGTCTAGAGATTCTCACCAAACAAGGCAATTGGGTTCAAGTTACTATCCCAAAAGGAGCTGTTGTGGTCTCTGTTGGCGACGCATTCAAGGTTTGGAGCAATGGTAGACTTCATGCTTCAAGACACAGAGTGATCATGAGCAGTAGTAGTACTGTAGACAACAAATTAGAAGACAGGTACTCTTGTGCTTTGTTTGGATTGCCAGAGGAGGAGTCGATAATCCAACCGCAAAATGAGCTTGCAGACATGGAGCATCCTCTGCTGTATCGGCCATTCATACTCGCCGGATTCTTTAAGTACATTACCACCAATATTTATGCTCTTTCTGATAATCCGCTGAGAAATTATGCTGGAATTGAACTAGTACTGCAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

169

Amino Acids

18.93

Weight (kDa)

6.06

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	16 - 109	5.4e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	238, 288
AciI	CCGC	2 cut(s)	359, 467
AcoI	YGGCCR	1 cut(s)	401
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	6 cut(s)	8, 28, 283, 311, 431, 498
AgsI	TTSAA	4 cut(s)	170, 220, 252, 491
AhlI	ACTAGT	2 cut(s)	23, 493
AluBI	AGCT	2 cut(s)	191, 370
AluI	AGCT	2 cut(s)	191, 370
Alw26I	GTCTC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	139
BaeI	ACNNNNGTAYC	2 cut(s)	301, 334
BbsI	GAAGAC	1 cut(s)	309
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	205
BcuI	ACTAGT	2 cut(s)	23, 493
BfaI	CTAG	3 cut(s)	24, 137, 494
BfmI	CTRYAG	2 cut(s)	285, 500
BmcAI	AGTACT	3 cut(s)	8, 283, 498
BmsI	GCATC	2 cut(s)	62, 394
BpiI	GAAGAC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 220, 250
Bse3DI	GCAATG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	353, 356
BshFI	GGCC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	2
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	2 cut(s)	359, 467
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	504
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	238
BssMI	GATC	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	106, 286
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 367, 391, 400
BstSFI	CTRYAG	2 cut(s)	285, 500
BstV2I	GAAGAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	372
CciI	TCATGA	1 cut(s)	267
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	6 cut(s)	7, 27, 282, 310, 430, 497
CviAII	CATG	3 cut(s)	245, 268, 379
CviJI	RGCY	4 cut(s)	62, 191, 370, 403
CviKI_1	RGCY	4 cut(s)	62, 191, 370, 403
CviQI	GTAC	6 cut(s)	7, 27, 282, 310, 430, 497
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
DraIII	CACNNNGTG	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	248, 271, 382
FaiI	YATR	7 cut(s)	101, 246, 269, 380, 410, 450, 480
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	3 cut(s)	244, 267, 378
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	2 cut(s)	238, 288
FokI	GGATG	1 cut(s)	372
FspBI	CTAG	3 cut(s)	24, 137, 494
HaeIII	GGCC	1 cut(s)	403
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	248, 271, 382
HinfI	GANTC	3 cut(s)	142, 344, 420
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	239, 289
Hpy188I	TCNGA	2 cut(s)	37, 460
Hpy188III	TCNNGA	4 cut(s)	110, 137, 252, 268
Hpy8I	GTNNAC	2 cut(s)	239, 289
Hpy99I	CGWCG	2 cut(s)	71, 215
HpyCH4III	ACNGT	2 cut(s)	106, 286
HpyCH4V	TGCA	3 cut(s)	130, 374, 502
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 367, 391, 400
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	248, 271, 382
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	188, 228, 382
LpnPI	CCDG	5 cut(s)	128, 292, 348, 430, 468
LweI	GCATC	2 cut(s)	62, 394
MaeI	CTAG	3 cut(s)	24, 137, 494
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	1 cut(s)	314
MfeI	CAATTG	1 cut(s)	160
MluCI	AATT	5 cut(s)	160, 296, 475, 486, 505
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	4 cut(s)	90, 331, 334, 399
MseI	TTAA	2 cut(s)	120, 426
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	160
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	59, 367, 391, 400
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	3 cut(s)	248, 271, 382
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	142, 420
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	504
RsaI	GTAC	6 cut(s)	8, 28, 283, 311, 431, 498
RsaNI	GTAC	6 cut(s)	7, 27, 282, 310, 430, 497
SaqAI	TTAA	2 cut(s)	120, 426
Sau3AI	GATC	1 cut(s)	264
ScaI	AGTACT	3 cut(s)	8, 283, 498
SchI	GAGTC	1 cut(s)	353
SetI	ASST	5 cut(s)	136, 193, 225, 311, 372
SfaNI	GCATC	2 cut(s)	62, 394
SfcI	CTRYAG	2 cut(s)	285, 500
SpeI	ACTAGT	2 cut(s)	23, 493
Sse9I	AATT	5 cut(s)	160, 296, 475, 486, 505
SsiI	CCGC	2 cut(s)	359, 467
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	24, 137, 494
TaaI	ACNGT	2 cut(s)	106, 286
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	160, 296, 475, 486, 505
TatI	WGTACW	4 cut(s)	6, 281, 429, 496
TfiI	GAWTC	2 cut(s)	142, 420
Tru1I	TTAA	2 cut(s)	120, 426
Tru9I	TTAA	2 cut(s)	120, 426
TspDTI	ATGAA	4 cut(s)	17, 88, 233, 397
XbaI	TCTAGA	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	238, 288
XspI	CTAG	3 cut(s)	24, 137, 494
ZrmI	AGTACT	3 cut(s)	8, 283, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.