Prupe.1G468100_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000834
Physical Location & Seq
Reverse (-)
38974329 .. 38976866
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G468100.1

Sequence Viewer

Length: 954 bp
ATGGGAGAGGAAGCTCATGCTGATCAAGTACTTCCAATTCTTGATTTTTCAGAGGGTTTAGTTTTAAAACAAGGGACTGAGGAATGGAAAGCTATGAACAACAAAGTTAGAGAGGCATGTGAGAATTATGGTTGCTTTCTTGTGTTAGTGAAGGATGAGATCCCCATGAATTTACGTGAAGAAATGGTGGCGGCCATGAAAGCTTTGTTTGATCTGCCTGAAGAGACCAAGCAGAAGCACACAAGCCCCAAGCCTTACCAAAGCTATGAAGGGAAGAGCCCTGTCATTCCCTTGAACGAAAGCTTTGGCATCGACAATGCCTGCGAGCTCGATGTAGCTGAAGCCTTCACCAACCTAATGTGGCCACAAGGCAAGCCTTCTTTCTGTGAGGCTATGAAATCCATGACTTCAAAGATGATGGAATTGAATCTCATCATCCTTAGGATGATTCTGGAGAGCTTTGGCTTGGGAGACCACTATGAATCCCATGCCCAAAACACCACCAGTGCGTTTCGTTTCATGAAGTACAAAGCTCCTCCTCCAAGCAACATTAACAATGCCCTTGGTCTTGTGCCTCACACTGACAAAAACACCCTAACCATTCTGTGCCAAAACGATGTGCAAGGCCTAGAGATTCTGACCAAACAAGGCAAATGGGCGGAGGTGATGGTCCCGAAAGAAGCTGTTATGGTGTTTGTTGGGGATGCACTTAAAGCCTGGAGCAATGGGAGGCTTCATGCAGTGACACATAGGGTTATGATGAGTGGGGACAAAGAGAGGTACTCGTATGCCCTATTTTCTTTGCCTAAAGAGGAGGTGGTAATTGAAGTACCTCAGGAATTTATAGACAAAGAGCACCCTTTGCTATACAAGCCATTCAACTTTGCTGAATACTTCACATACTTCACGTCCAATACTCGTGAGGATGCACTTGAATTATATGCTGGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

318

Amino Acids

35.98

Weight (kDa)

5.1

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 659
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 2 cut(s) 192, 362
AcsI RAATTY 2 cut(s) 169, 839
AcuI CTGAAG 2 cut(s) 240, 360
AfaI GTAC 4 cut(s) 30, 527, 782, 831
AgsI TTSAA 6 cut(s) 295, 411, 427, 827, 880, 935
AjiI CACGTC 1 cut(s) 909
AjnI CCWGG 1 cut(s) 716
Alw21I GWGCWC 2 cut(s) 330, 858
Alw26I GTCTC 2 cut(s) 218, 465
AlwI GGATC 1 cut(s) 154
AoxI GGCC 3 cut(s) 192, 362, 625
ApoI RAATTY 2 cut(s) 169, 839
AspS9I GGNCC 1 cut(s) 670
AsuHPI GGTGA 2 cut(s) 340, 676
AvaII GGWCC 1 cut(s) 670
AxyI CCTNAGG 2 cut(s) 440, 834
BalI TGGCCA 1 cut(s) 364
BanII GRGCYC 2 cut(s) 281, 330
BauI CACGAG 1 cut(s) 918
Bbv12I GWGCWC 2 cut(s) 330, 858
BccI CCATC 2 cut(s) 412, 661
BciT130I CCWGG 1 cut(s) 718
BclI TGATCA 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 218, 465
BfaI CTAG 1 cut(s) 629
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 718
Bme18I GGWCC 1 cut(s) 670
BmgBI CACGTC 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 670
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 3 cut(s) 318, 694, 916
BplI GAGNNNNNCTC 2 cut(s) 767, 799
BpmI CTGGAG 2 cut(s) 473, 739
BsaAI YACGTR 1 cut(s) 176
BsaI GGTCTC 2 cut(s) 218, 465
BsaJI CCNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 504
Bse21I CCTNAGG 2 cut(s) 440, 834
Bse3DI GCAATG 1 cut(s) 730
BseBI CCWGG 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 5 cut(s) 160, 435, 450, 709, 931
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 69, 848
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 3 cut(s) 525, 528, 827
BshFI GGCC 3 cut(s) 194, 364, 627
BsiHKAI GWGCWC 2 cut(s) 330, 858
BslFI GGGAC 3 cut(s) 88, 656, 782
BsmAI GTCTC 2 cut(s) 218, 465
BsmFI GGGAC 3 cut(s) 88, 656, 782
BsnI GGCC 3 cut(s) 194, 364, 627
Bso31I GGTCTC 2 cut(s) 218, 465
Bsp1286I GDGCHC 3 cut(s) 281, 330, 858
Bsp143I GATC 3 cut(s) 22, 159, 211
BspACI CCGC 2 cut(s) 191, 659
BspANI GGCC 3 cut(s) 194, 364, 627
BspCNI CTCAG 2 cut(s) 70, 847
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 672
BspPI GGATC 1 cut(s) 154
BspQI GCTCTTC 1 cut(s) 269
BspTNI GGTCTC 2 cut(s) 218, 465
BsrDI GCAATG 1 cut(s) 730
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 3 cut(s) 22, 159, 211
BssSI CACGAG 1 cut(s) 918
BssT1I CCWWGG 1 cut(s) 562
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 1 cut(s) 718
Bst6I CTCTTC 2 cut(s) 216, 269
BstAPI GCANNNNNTGC 1 cut(s) 862
BstBAI YACGTR 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 322, 326, 374
BstDEI CTNAG 3 cut(s) 78, 440, 834
BstF5I GGATG 5 cut(s) 160, 435, 450, 709, 931
BstKTI GATC 3 cut(s) 25, 162, 214
BstMAI GTCTC 2 cut(s) 218, 465
BstMBI GATC 3 cut(s) 22, 159, 211
BstMWI GCNNNNNNNGC 4 cut(s) 200, 713, 862, 871
BstNI CCWGG 1 cut(s) 718
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu36I CCTNAGG 2 cut(s) 440, 834
BsuRI GGCC 3 cut(s) 194, 364, 627
BtrI CACGTC 1 cut(s) 909
BtsCI GGATG 5 cut(s) 160, 435, 450, 709, 931
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 3 cut(s) 511, 579, 747
Cac8I GCNNGC 3 cut(s) 322, 326, 374
CciI TCATGA 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 670
Csp6I GTAC 4 cut(s) 29, 526, 781, 830
CviAII CATG 8 cut(s) 17, 117, 166, 196, 403, 488, 520, 737
CviQI GTAC 4 cut(s) 29, 526, 781, 830
DdeI CTNAG 3 cut(s) 78, 440, 834
DpnI GATC 3 cut(s) 24, 161, 213
DpnII GATC 3 cut(s) 22, 159, 211
DraI TTTAAA 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 192, 362
Eam1104I CTCTTC 2 cut(s) 216, 269
EarI CTCTTC 2 cut(s) 216, 269
EciI GGCGGA 1 cut(s) 674
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 627
Eco24I GRGCYC 2 cut(s) 281, 330
Eco31I GGTCTC 2 cut(s) 218, 465
Eco47I GGWCC 1 cut(s) 670
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 240, 360
Eco81I CCTNAGG 2 cut(s) 440, 834
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 716
EcoT14I CCWWGG 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 281, 330
ErhI CCWWGG 1 cut(s) 562
FaeI CATG 8 cut(s) 20, 120, 169, 199, 406, 491, 523, 740
FaqI GGGAC 3 cut(s) 88, 656, 782
FatI CATG 8 cut(s) 16, 116, 165, 195, 402, 487, 519, 736
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 5 cut(s) 167, 422, 457, 716, 938
FriOI GRGCYC 2 cut(s) 281, 330
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 629
GluI GCNGC 1 cut(s) 192
GsuI CTGGAG 2 cut(s) 473, 739
HaeIII GGCC 3 cut(s) 194, 364, 627
Hin1II CATG 8 cut(s) 20, 120, 169, 199, 406, 491, 523, 740
HindIII AAGCTT 2 cut(s) 201, 301
HinfI GANTC 4 cut(s) 427, 448, 482, 634
HphI GGTGA 2 cut(s) 340, 676
Hpy188I TCNGA 2 cut(s) 52, 639
Hpy188III TCNNGA 6 cut(s) 41, 452, 520, 673, 836, 920
HpyAV CCTTC 4 cut(s) 145, 263, 355, 387
HpyCH4IV ACGT 2 cut(s) 175, 908
HpyCH4V TGCA 4 cut(s) 622, 707, 740, 929
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 713, 862, 871
HpyF3I CTNAG 3 cut(s) 78, 440, 834
HpySE526I ACGT 2 cut(s) 175, 908
Hsp92II CATG 8 cut(s) 20, 120, 169, 199, 406, 491, 523, 740
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 159, 211
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 538, 720
LpnPI CCDG 9 cut(s) 231, 294, 334, 437, 517, 703, 730, 821, 930
LweI GCATC 3 cut(s) 318, 694, 916
MaeI CTAG 1 cut(s) 629
MaeII ACGT 2 cut(s) 175, 908
MaeIII GTNAC 1 cut(s) 742
MalI GATC 3 cut(s) 24, 161, 213
MboI GATC 3 cut(s) 22, 159, 211
MboII GAAGA 3 cut(s) 191, 233, 286
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 281, 330, 858
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 7 cut(s) 36, 124, 169, 422, 822, 839, 935
MluNI TGGCCA 1 cut(s) 364
Mox20I TGGCCA 1 cut(s) 364
MscI TGGCCA 1 cut(s) 364
MseI TTAA 3 cut(s) 65, 552, 711
Msp20I TGGCCA 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 718
MvaI CCWGG 1 cut(s) 718
MwoI GCNNNNNNNGC 4 cut(s) 200, 713, 862, 871
NdeII GATC 3 cut(s) 22, 159, 211
NlaIII CATG 8 cut(s) 20, 120, 169, 199, 406, 491, 523, 740
NlaIV GGNNCC 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 120
PagI TCATGA 1 cut(s) 519
PceI AGGCCT 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 269
PfeI GAWTC 4 cut(s) 427, 448, 482, 634
PkrI GCNGC 1 cut(s) 193
Ppu21I YACGTR 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 716
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 670
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 4 cut(s) 30, 527, 782, 831
RsaNI GTAC 4 cut(s) 29, 526, 781, 830
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 65, 552, 711
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 3 cut(s) 22, 159, 211
Sau96I GGNCC 1 cut(s) 670
ScaI AGTACT 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 3 cut(s) 281, 330, 858
SfaNI GCATC 3 cut(s) 318, 694, 916
SinI GGWCC 1 cut(s) 670
Sse9I AATT 7 cut(s) 36, 124, 169, 422, 822, 839, 935
SseBI AGGCCT 1 cut(s) 627
SsiI CCGC 2 cut(s) 191, 659
SspMI CTAG 1 cut(s) 629
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 716
StyI CCWWGG 1 cut(s) 562
TaiI ACGT 2 cut(s) 178, 911
TaqI TCGA 2 cut(s) 312, 330
TasI AATT 7 cut(s) 36, 124, 169, 422, 822, 839, 935
TatI WGTACW 2 cut(s) 28, 525
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 4 cut(s) 427, 448, 482, 634
Tru1I TTAA 3 cut(s) 65, 552, 711
Tru9I TTAA 3 cut(s) 65, 552, 711
TscAI CASTG 3 cut(s) 511, 586, 747
TseFI GTSAC 1 cut(s) 742
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 9 cut(s) 110, 182, 212, 282, 410, 495, 508, 536, 725
TspRI CASTG 3 cut(s) 511, 586, 747
VpaK11BI GGWCC 1 cut(s) 670
XapI RAATTY 2 cut(s) 169, 839
XceI RCATGY 1 cut(s) 120
XspI CTAG 1 cut(s) 629
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.