Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

85664522 .. 85665991

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGATCAGGAACAACTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCAGGCACCACCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTTTGCACTGGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGATGTTCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTCTTGGCTATGTCGGGCAATACCCCGTGGTGCCCCTATTTGAGAGCATGGGTATTGAGGAAGCAAACGTCTATGGGCAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGAAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACATTCTTTGCGTCATGAAATATAAGGGCCCTCAAACCAGCGAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACCATTTTGCACCAAGTTGAAGGACTAGAGGTACAAACCAAAGATGGGAAATGGATCAATGTTCAACCCTCGCCGGAGTCATTTATCGCCATTATTGGTGATTCTCTCGATGCATGGACAAATGGTCGACTACATTGTCCACATCATCGACACCCGATGACTGGAAATGAGGCTAGGTACTCCACTACATTGGTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTATTAGATTTGTCTTTTCAGAGGCTGGTCAGAGAGCACAATCTGCTTTGAAGACTTATTGTGGTGTCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

35.63

Weight (kDa)

5.73

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	3.5e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 257	4.7e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AasI	GACNNNNNNGTC	1 cut(s)	714
Acc36I	ACCTGC	1 cut(s)	779
AccB1I	GGYRCC	2 cut(s)	65, 274
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	706
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 423, 641
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	612, 758
AfiI	CCNNNNNNNGG	6 cut(s)	75, 248, 624, 740, 788, 814
AgsI	TTSAA	6 cut(s)	179, 329, 599, 644, 847, 919
AhdI	GACNNNNNGTC	1 cut(s)	702
AjnI	CCWGG	2 cut(s)	61, 465
AluBI	AGCT	5 cut(s)	92, 193, 412, 447, 544
AluI	AGCT	5 cut(s)	92, 193, 412, 447, 544
Alw21I	GWGCWC	2 cut(s)	94, 907
Alw26I	GTCTC	2 cut(s)	530, 778
AlwI	GGATC	3 cut(s)	13, 423, 641
AlwNI	CAGNNNCTG	1 cut(s)	893
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	3 cut(s)	350, 520, 547
ApaI	GGGCCC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	520, 521, 547
AsuHPI	GGTGA	2 cut(s)	571, 689
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	93
BaeGI	GKGCMC	2 cut(s)	279, 524
BanI	GGYRCC	2 cut(s)	65, 274
BanII	GRGCYC	2 cut(s)	94, 524
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	2 cut(s)	94, 907
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	63, 467
BcoDI	GTCTC	2 cut(s)	530, 778
BfaI	CTAG	3 cut(s)	605, 753, 943
BfuAI	ACCTGC	1 cut(s)	779
Bme1390I	CCNGG	2 cut(s)	63, 467
BmeRI	GACNNNNNGTC	1 cut(s)	702
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	3 cut(s)	520, 521, 547
BmiI	GGNNCC	3 cut(s)	67, 276, 522
BmrFI	CCNGG	2 cut(s)	63, 467
BmsI	GCATC	2 cut(s)	679, 841
BpiI	GAAGAC	1 cut(s)	926
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 476
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 248, 624, 740, 788, 814
Bse1I	ACTGG	2 cut(s)	114, 745
BseBI	CCWGG	2 cut(s)	63, 467
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	829, 832
BseLI	CCNNNNNNNGG	6 cut(s)	75, 248, 624, 740, 788, 814
BseMII	CTCAG	2 cut(s)	96, 399
BseNI	ACTGG	2 cut(s)	114, 745
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	2 cut(s)	279, 524
BseYI	CCCAGC	1 cut(s)	544
BshFI	GGCC	3 cut(s)	352, 522, 549
BshNI	GGYRCC	2 cut(s)	65, 274
BsiHKAI	GWGCWC	2 cut(s)	94, 907
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	2 cut(s)	92, 465
BslI	CCNNNNNNNGG	6 cut(s)	75, 248, 624, 740, 788, 814
BsmAI	GTCTC	2 cut(s)	530, 778
BsmFI	GGGAC	2 cut(s)	92, 465
BsnI	GGCC	3 cut(s)	352, 522, 549
Bso31I	GGTCTC	1 cut(s)	778
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	4 cut(s)	94, 279, 524, 907
Bsp143I	GATC	4 cut(s)	5, 415, 633, 856
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	352, 522, 549
BspCNI	CTCAG	2 cut(s)	95, 400
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	67, 276, 522
BspMI	ACCTGC	1 cut(s)	779
BspPI	GGATC	3 cut(s)	13, 423, 641
BspQI	GCTCTTC	2 cut(s)	183, 822
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	65, 274
BspTNI	GGTCTC	1 cut(s)	778
BsrI	ACTGG	2 cut(s)	114, 745
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	5, 415, 633, 856
Bst2UI	CCWGG	2 cut(s)	63, 467
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	108, 183, 822
BstAPI	GCANNNNNTGC	2 cut(s)	838, 911
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	82, 408, 540
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	829, 832
BstKTI	GATC	4 cut(s)	8, 418, 636, 859
BstMAI	GTCTC	2 cut(s)	530, 778
BstMBI	GATC	4 cut(s)	5, 415, 633, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
BstNI	CCWGG	2 cut(s)	63, 467
BstSCI	CCNGG	2 cut(s)	61, 465
BstSLI	GKGCMC	2 cut(s)	279, 524
BstV2I	GAAGAC	1 cut(s)	926
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	352, 522, 549
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	829, 832
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	779
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	3 cut(s)	520, 521, 547
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	611, 757
CviAII	CATG	5 cut(s)	46, 292, 508, 693, 860
CviQI	GTAC	2 cut(s)	611, 757
DdeI	CTNAG	3 cut(s)	82, 408, 540
DpnI	GATC	4 cut(s)	7, 417, 635, 858
DpnII	GATC	4 cut(s)	5, 415, 633, 856
DraIII	CACNNNGTG	1 cut(s)	75
DrdI	GACNNNNNNGTC	1 cut(s)	714
DriI	GACNNNNNGTC	1 cut(s)	702
DseDI	GACNNNNNNGTC	1 cut(s)	714
Eam1104I	CTCTTC	3 cut(s)	108, 183, 822
Eam1105I	GACNNNNNGTC	1 cut(s)	702
EarI	CTCTTC	3 cut(s)	108, 183, 822
Ecl136II	GAGCTC	1 cut(s)	92
Eco24I	GRGCYC	2 cut(s)	94, 524
Eco31I	GGTCTC	1 cut(s)	778
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	92
EcoO109I	RGGNCCY	2 cut(s)	520, 521
EcoRII	CCWGG	2 cut(s)	61, 465
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	2 cut(s)	94, 524
FaeI	CATG	5 cut(s)	49, 295, 511, 696, 863
FaqI	GGGAC	2 cut(s)	92, 465
FatI	CATG	5 cut(s)	45, 291, 507, 692, 859
FblI	GTMKAC	1 cut(s)	706
FokI	GGATG	2 cut(s)	819, 836
FriOI	GRGCYC	2 cut(s)	94, 524
FspBI	CTAG	3 cut(s)	605, 753, 943
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	352, 522, 549
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	1 cut(s)	493
Hin1II	CATG	5 cut(s)	49, 295, 511, 696, 863
HincII	GTYRAC	2 cut(s)	486, 707
HindII	GTYRAC	2 cut(s)	486, 707
HinfI	GANTC	4 cut(s)	80, 96, 656, 680
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	2 cut(s)	571, 689
Hpy166II	GTNNAC	3 cut(s)	486, 707, 719
Hpy188I	TCNGA	5 cut(s)	157, 397, 409, 889, 900
Hpy188III	TCNNGA	3 cut(s)	9, 508, 686
Hpy8I	GTNNAC	3 cut(s)	486, 707, 719
HpyAV	CCTTC	3 cut(s)	162, 400, 593
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	228, 312
HpyCH4V	TGCA	4 cut(s)	49, 107, 589, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
HpyF3I	CTNAG	3 cut(s)	82, 408, 540
HpySE526I	ACGT	2 cut(s)	228, 312
Hsp92II	CATG	5 cut(s)	49, 295, 511, 696, 863
Kzo9I	GATC	4 cut(s)	5, 415, 633, 856
LguI	GCTCTTC	2 cut(s)	183, 822
LweI	GCATC	2 cut(s)	679, 841
MaeI	CTAG	3 cut(s)	605, 753, 943
MaeII	ACGT	2 cut(s)	228, 312
MaeIII	GTNAC	2 cut(s)	577, 791
MalI	GATC	4 cut(s)	7, 417, 635, 858
MboI	GATC	4 cut(s)	5, 415, 633, 856
MboII	GAAGA	5 cut(s)	125, 200, 441, 839, 931
MhlI	GDGCHC	4 cut(s)	94, 279, 524, 907
MluCI	AATT	3 cut(s)	218, 367, 420
MlyI	GAGTC	3 cut(s)	74, 105, 665
Mph1103I	ATGCAT	1 cut(s)	694
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	141
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	2 cut(s)	63, 467
MvaI	CCWGG	2 cut(s)	63, 467
MwoI	GCNNNNNNNGC	3 cut(s)	838, 847, 911
NdeII	GATC	4 cut(s)	5, 415, 633, 856
NlaIII	CATG	5 cut(s)	49, 295, 511, 696, 863
NlaIV	GGNNCC	3 cut(s)	67, 276, 522
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	694
NspV	TTCGAA	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	507
PciSI	GCTCTTC	2 cut(s)	183, 822
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	3 cut(s)	74, 104, 664
PpsI	GAGTC	3 cut(s)	74, 104, 664
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	1 cut(s)	94
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 465
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	61, 465
PspN4I	GGNNCC	3 cut(s)	67, 276, 522
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	3 cut(s)	520, 521, 547
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	893
RsaI	GTAC	2 cut(s)	612, 758
RsaNI	GTAC	2 cut(s)	611, 757
SacI	GAGCTC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	705
SapI	GCTCTTC	2 cut(s)	183, 822
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	5, 415, 633, 856
Sau96I	GGNCC	3 cut(s)	520, 521, 547
SchI	GAGTC	3 cut(s)	74, 105, 665
ScrFI	CCNGG	2 cut(s)	63, 467
SduI	GDGCHC	4 cut(s)	94, 279, 524, 907
SfaNI	GCATC	2 cut(s)	679, 841
Sfr274I	CTCGAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	3 cut(s)	56, 93, 455
SmoI	CTYRAG	3 cut(s)	56, 93, 455
Sse9I	AATT	3 cut(s)	218, 367, 420
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	605, 753, 943
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	2 cut(s)	61, 465
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	231, 315
TasI	AATT	3 cut(s)	218, 367, 420
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	374, 524, 840
TspRI	CASTG	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	605, 753, 943
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.