Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

84020463 .. 84021924

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G048310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGATCAGGAGCACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCAGGCACCATCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTTTGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGACGTCCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACTAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCCGTGGTGCCGGTATATGAGAGCATGTGTATTGAAGAAGCAAACGTCTATGGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCAAGTCATGAAATATAAGGGCCCTCAAACCAGCGGGACTAAGCCGTACACCCACACGGATAAGAACATTGTCACCATTCTACACCAAAACCGAGTTGAAGGACTAGAGGTACAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGTGATTCTCTCGATGCATGGACAAATGGTCGACTGCATTGTCCACATCATCGACACCCGATGACTGGAAATGAGGCGAAGTACTCCACTGCATTGTTCTCTTTCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATAATGTCGAGTTTCTTGGATTTTGCTTTTCAGAGGCTGGTCTGAGAGCTCAATCTGCTTTAAAGACTTATTGTGGTGTCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

311

Amino Acids

35.35

Weight (kDa)

5.84

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	6 - 84	9.9e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 258	1e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	705
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	770
AccB1I	GGYRCC	2 cut(s)	56, 265
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	697
AciI	CCGC	2 cut(s)	91, 525
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	3 cut(s)	13, 414, 632
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	3 cut(s)	539, 603, 749
AfiI	CCNNNNNNNGG	6 cut(s)	66, 239, 615, 731, 779, 805
AgsI	TTSAA	6 cut(s)	170, 293, 320, 494, 590, 838
AhdI	GACNNNNNGTC	1 cut(s)	693
AjnI	CCWGG	2 cut(s)	52, 456
AluBI	AGCT	5 cut(s)	83, 184, 403, 438, 896
AluI	AGCT	5 cut(s)	83, 184, 403, 438, 896
Alw21I	GWGCWC	3 cut(s)	16, 85, 898
AlwI	GGATC	3 cut(s)	13, 414, 632
AlwNI	CAGNNNCTG	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	2 cut(s)	341, 511
ApaI	GGGCCC	1 cut(s)	515
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	511, 512
AsuHPI	GGTGA	2 cut(s)	556, 680
AvaI	CYCGRG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	2 cut(s)	56, 265
BanII	GRGCYC	3 cut(s)	85, 515, 898
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
Bbv12I	GWGCWC	3 cut(s)	16, 85, 898
BccI	CCATC	2 cut(s)	68, 608
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	54, 458
BfaI	CTAG	2 cut(s)	596, 934
BfuAI	ACCTGC	1 cut(s)	770
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	2 cut(s)	54, 458
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	2 cut(s)	511, 512
BmiI	GGNNCC	3 cut(s)	58, 267, 513
BmrFI	CCNGG	2 cut(s)	54, 458
BmsI	GCATC	2 cut(s)	670, 832
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	32, 467
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 239, 615, 731, 779, 805
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	736
BseBI	CCWGG	2 cut(s)	54, 458
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	820, 823
BseLI	CCNNNNNNNGG	6 cut(s)	66, 239, 615, 731, 779, 805
BseMII	CTCAG	3 cut(s)	87, 390, 881
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	343, 513
BshNI	GGYRCC	2 cut(s)	56, 265
BsiHKAI	GWGCWC	3 cut(s)	16, 85, 898
BsiHKCI	CYCGRG	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	269, 644
BslFI	GGGAC	3 cut(s)	83, 456, 541
BslI	CCNNNNNNNGG	6 cut(s)	66, 239, 615, 731, 779, 805
BsmFI	GGGAC	3 cut(s)	83, 456, 541
BsnI	GGCC	2 cut(s)	343, 513
BsoBI	CYCGRG	1 cut(s)	84
Bsp120I	GGGCCC	1 cut(s)	511
Bsp1286I	GDGCHC	4 cut(s)	16, 85, 515, 898
Bsp143I	GATC	3 cut(s)	5, 406, 624
BspACI	CCGC	2 cut(s)	91, 525
BspANI	GGCC	2 cut(s)	343, 513
BspCNI	CTCAG	3 cut(s)	86, 391, 882
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	58, 267, 513
BspMI	ACCTGC	1 cut(s)	770
BspPI	GGATC	3 cut(s)	13, 414, 632
BspQI	GCTCTTC	2 cut(s)	174, 813
BspT107I	GGYRCC	2 cut(s)	56, 265
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	5, 406, 624
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	54, 458
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	3 cut(s)	99, 174, 813
BstACI	GRCGYC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstDEI	CTNAG	4 cut(s)	73, 399, 531, 890
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	820, 823
BstKTI	GATC	3 cut(s)	8, 409, 627
BstMBI	GATC	3 cut(s)	5, 406, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	829, 838, 902
BstNI	CCWGG	2 cut(s)	54, 458
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	52, 456
BstSLI	GKGCMC	1 cut(s)	515
BsuRI	GGCC	2 cut(s)	343, 513
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	820, 823
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	770
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	511, 512
Csp6I	GTAC	3 cut(s)	538, 602, 748
CviAII	CATG	6 cut(s)	37, 239, 283, 499, 661, 684
CviQI	GTAC	3 cut(s)	538, 602, 748
DdeI	CTNAG	4 cut(s)	73, 399, 531, 890
DpnI	GATC	3 cut(s)	7, 408, 626
DpnII	GATC	3 cut(s)	5, 406, 624
DraI	TTTAAA	1 cut(s)	909
DrdI	GACNNNNNNGTC	1 cut(s)	705
DriI	GACNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	705
Eam1104I	CTCTTC	3 cut(s)	99, 174, 813
Eam1105I	GACNNNNNGTC	1 cut(s)	693
EarI	CTCTTC	3 cut(s)	99, 174, 813
Ecl136II	GAGCTC	2 cut(s)	83, 896
Eco24I	GRGCYC	3 cut(s)	85, 515, 898
Eco53kI	GAGCTC	2 cut(s)	83, 896
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	84
EcoICRI	GAGCTC	2 cut(s)	83, 896
EcoO109I	RGGNCCY	2 cut(s)	511, 512
EcoRII	CCWGG	2 cut(s)	52, 456
EcoT22I	ATGCAT	1 cut(s)	685
EcoT38I	GRGCYC	3 cut(s)	85, 515, 898
FaeI	CATG	6 cut(s)	40, 242, 286, 502, 664, 687
FaqI	GGGAC	3 cut(s)	83, 456, 541
FatI	CATG	6 cut(s)	36, 238, 282, 498, 660, 683
FauI	CCCGC	1 cut(s)	518
FblI	GTMKAC	1 cut(s)	697
FokI	GGATG	2 cut(s)	810, 827
FriOI	GRGCYC	3 cut(s)	85, 515, 898
FspBI	CTAG	2 cut(s)	596, 934
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	343, 513
HapII	CCGG	2 cut(s)	269, 644
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	6 cut(s)	40, 242, 286, 502, 664, 687
HincII	GTYRAC	2 cut(s)	477, 698
HindII	GTYRAC	2 cut(s)	477, 698
HinfI	GANTC	4 cut(s)	71, 87, 647, 671
HpaII	CCGG	2 cut(s)	269, 644
HphI	GGTGA	2 cut(s)	556, 680
Hpy166II	GTNNAC	4 cut(s)	477, 540, 698, 710
Hpy188I	TCNGA	6 cut(s)	148, 155, 388, 400, 880, 891
Hpy188III	TCNNGA	3 cut(s)	9, 499, 677
Hpy8I	GTNNAC	4 cut(s)	477, 540, 698, 710
HpyAV	CCTTC	5 cut(s)	153, 391, 497, 584, 648
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	3 cut(s)	150, 219, 303
HpyCH4V	TGCA	5 cut(s)	40, 98, 683, 703, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	829, 838, 902
HpyF3I	CTNAG	4 cut(s)	73, 399, 531, 890
HpySE526I	ACGT	3 cut(s)	150, 219, 303
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	6 cut(s)	40, 242, 286, 502, 664, 687
Kzo9I	GATC	3 cut(s)	5, 406, 624
LguI	GCTCTTC	2 cut(s)	174, 813
LmnI	GCTCC	1 cut(s)	11
LweI	GCATC	2 cut(s)	670, 832
MaeI	CTAG	2 cut(s)	596, 934
MaeII	ACGT	3 cut(s)	150, 219, 303
MaeIII	GTNAC	2 cut(s)	562, 782
MalI	GATC	3 cut(s)	7, 408, 626
MboI	GATC	3 cut(s)	5, 406, 624
MboII	GAAGA	5 cut(s)	116, 191, 305, 482, 830
MhlI	GDGCHC	4 cut(s)	16, 85, 515, 898
MluCI	AATT	3 cut(s)	209, 358, 411
MlyI	GAGTC	3 cut(s)	65, 96, 656
Mph1103I	ATGCAT	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	220
MseI	TTAA	3 cut(s)	132, 633, 908
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	2 cut(s)	269, 644
MspR9I	CCNGG	2 cut(s)	54, 458
MvaI	CCWGG	2 cut(s)	54, 458
MwoI	GCNNNNNNNGC	3 cut(s)	829, 838, 902
NdeII	GATC	3 cut(s)	5, 406, 624
NlaIII	CATG	6 cut(s)	40, 242, 286, 502, 664, 687
NlaIV	GGNNCC	3 cut(s)	58, 267, 513
NmuCI	GTSAC	1 cut(s)	562
NsiI	ATGCAT	1 cut(s)	685
NspI	RCATGY	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	84
PagI	TCATGA	1 cut(s)	498
PciSI	GCTCTTC	2 cut(s)	174, 813
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	66
PleI	GAGTC	3 cut(s)	65, 95, 655
PpsI	GAGTC	3 cut(s)	65, 95, 655
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	2 cut(s)	85, 898
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	52, 456
PspGI	CCWGG	2 cut(s)	52, 456
PspN4I	GGNNCC	3 cut(s)	58, 267, 513
PspOMI	GGGCCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	511, 512
PspXI	VCTCGAGB	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	884
RsaI	GTAC	3 cut(s)	539, 603, 749
RsaNI	GTAC	3 cut(s)	538, 602, 748
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	85, 898
SalI	GTCGAC	1 cut(s)	696
SapI	GCTCTTC	2 cut(s)	174, 813
SaqAI	TTAA	3 cut(s)	132, 633, 908
Sau3AI	GATC	3 cut(s)	5, 406, 624
Sau96I	GGNCC	2 cut(s)	511, 512
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	3 cut(s)	65, 96, 656
ScrFI	CCNGG	2 cut(s)	54, 458
SduI	GDGCHC	4 cut(s)	16, 85, 515, 898
SfaNI	GCATC	2 cut(s)	670, 832
Sfr274I	CTCGAG	1 cut(s)	84
SlaI	CTCGAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	3 cut(s)	47, 84, 446
SmoI	CTYRAG	3 cut(s)	47, 84, 446
Sse9I	AATT	3 cut(s)	209, 358, 411
SsiI	CCGC	2 cut(s)	91, 525
SspMI	CTAG	2 cut(s)	596, 934
SstI	GAGCTC	2 cut(s)	85, 898
StyD4I	CCNGG	2 cut(s)	52, 456
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	3 cut(s)	153, 222, 306
TasI	AATT	3 cut(s)	209, 358, 411
TatI	WGTACW	1 cut(s)	747
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	3 cut(s)	132, 633, 908
Tru9I	TTAA	3 cut(s)	132, 633, 908
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	227, 365, 515, 831
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	760
Van91I	CCANNNNNTGG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	220
XspI	CTAG	2 cut(s)	596, 934
ZraI	GACGTC	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.