Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

52286123 .. 52312659

Gene Structure 26537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG355000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCAGAGGATACTAATGACGAAACACTTGAGGAGGAGGAAGATGATGAGAGTGCGAATGAATATACAGATGATGAAGATGTCAATTGGAAAGCCCGAAGAGCAGCAGCTAAATGCTTAGCGGCATTAATTGTATCTCATCTTGAGATGCTTGCCAAGCTATATGAGGAGCCGATAACGAACGATACCAAAGATGGTGATAATTTGATCGCGAATGACGCGGTATGGAGCAATGACAGAATAAAAGCATGCCAGCATCGAGTGAAACACTGCGGAGACAAGACTCGATACTCGCTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTGCCCAAAGAGTTAGTAGACGACAGCCACCCACTCCTCTACAAGCAGTTCGACAGCCGTGGTTTCATAAGATTTTACACCACACCGGAGGCTAAGAAGGCAGAGTCGCCCATCAAAGCGTACTGCGGAGTTAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

156

Amino Acids

17.8

Weight (kDa)

4.79

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	2 cut(s)	212, 221
AciI	CCGC	4 cut(s)	122, 221, 273, 456
AfaI	GTAC	1 cut(s)	452
AluBI	AGCT	2 cut(s)	110, 160
AluI	AGCT	2 cut(s)	110, 160
Alw26I	GTCTC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	104, 107
AseI	ATTAAT	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	116, 119
BccI	CCATC	2 cut(s)	188, 449
BceAI	ACGGC	1 cut(s)	372
BciVI	GTATCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	4
BisI	GCNGC	3 cut(s)	105, 108, 123
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	106, 109, 124
BmiI	GGNNCC	1 cut(s)	171
BmsI	GCATC	2 cut(s)	138, 265
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	2 cut(s)	50, 164
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	238
BseRI	GAGGAG	4 cut(s)	47, 50, 182, 356
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	116, 119
BseYI	CCCAGC	1 cut(s)	295
Bsh1236I	CGCG	2 cut(s)	212, 221
BsiSI	CCGG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	207
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp68I	TCGCGA	1 cut(s)	212
BspACI	CCGC	4 cut(s)	122, 221, 273, 456
BspFNI	CGCG	2 cut(s)	212, 221
BspLI	GGNNCC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	3 cut(s)	153, 250, 254
BstDEI	CTNAG	2 cut(s)	118, 423
BstDSI	CCRYGG	1 cut(s)	388
BstFNI	CGCG	2 cut(s)	212, 221
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 157, 218, 428
BstNSI	RCATGY	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	212, 221
BstV1I	GCAGC	2 cut(s)	116, 119
BsuI	GTATCC	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
BtuMI	TCGCGA	1 cut(s)	212
Cac8I	GCNNGC	3 cut(s)	153, 250, 254
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	7 cut(s)	95, 110, 160, 172, 357, 387, 422
CviKI_1	RGCY	7 cut(s)	95, 110, 160, 172, 357, 387, 422
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	118, 423
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	252
FaiI	YATR	6 cut(s)	66, 163, 165, 226, 250, 398
FatI	CATG	1 cut(s)	248
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	105, 108, 123
Fsp4HI	GCNGC	3 cut(s)	105, 108, 123
FspBI	CTAG	1 cut(s)	469
GluI	GCNGC	3 cut(s)	105, 108, 123
GsaI	CCCAGC	1 cut(s)	299
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	252
HinfI	GANTC	2 cut(s)	283, 434
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	306, 349
Hpy188III	TCNNGA	2 cut(s)	143, 211
Hpy8I	GTNNAC	2 cut(s)	306, 349
HpyAV	CCTTC	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 157, 218, 428
HpyF3I	CTNAG	2 cut(s)	118, 423
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	207
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	169, 228
LpnPI	CCDG	3 cut(s)	266, 281, 429
Lsp1109I	GCAGC	2 cut(s)	116, 119
LweI	GCATC	2 cut(s)	138, 265
MaeI	CTAG	1 cut(s)	469
MaeII	ACGT	1 cut(s)	308
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	53, 89, 111
MfeI	CAATTG	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	85, 129, 202
MlyI	GAGTC	2 cut(s)	277, 443
MnlI	CCTC	6 cut(s)	25, 28, 31, 160, 377, 412
MseI	TTAA	3 cut(s)	128, 312, 462
MspI	CCGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	85
MvnI	CGCG	2 cut(s)	212, 221
MwoI	GCNNNNNNNGC	4 cut(s)	101, 157, 218, 428
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	1 cut(s)	171
NruI	TCGCGA	1 cut(s)	212
NspI	RCATGY	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	106, 109, 124
PleI	GAGTC	2 cut(s)	277, 442
PpsI	GAGTC	2 cut(s)	277, 442
PshBI	ATTAAT	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	212
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	3 cut(s)	128, 312, 462
SatI	GCNGC	3 cut(s)	105, 108, 123
Sau3AI	GATC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	277, 443
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	3 cut(s)	112, 162, 311
SfaNI	GCATC	2 cut(s)	138, 265
SmlI	CTYRAG	2 cut(s)	29, 143
SmoI	CTYRAG	2 cut(s)	29, 143
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	85, 129, 202
SsiI	CCGC	4 cut(s)	122, 221, 273, 456
SspMI	CTAG	1 cut(s)	469
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	259, 286, 381
TasI	AATT	3 cut(s)	85, 129, 202
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	3 cut(s)	128, 312, 462
Tru9I	TTAA	3 cut(s)	128, 312, 462
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	2 cut(s)	104, 107
TspDTI	ATGAA	3 cut(s)	75, 90, 385
TspRI	CASTG	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	128
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.