Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

59611699 .. 59613483

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG411100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGATCAGAAACCCCTCTCAAACTTCCCACCATAGATTTCTCCTTGCAAAACCTCAAGCCAGGCACCCCCGAGTGGGACTCAGTTAGAGCTCGAGTCCGCTCCGCACTCGAAGAGTATGGTTGCTTCGAGGCTTTGTTTAACAAAGTTCCTTCAGACGTTCGAAAAGACATATTTGAAGCAACAGGAGAGCTTTTCGACCTACCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTCATGGCTATGTCGGGCAATACCCGATGGTCCCACTATATGAGAGCATGGGTATTGATGAAGCAGACGTCTATGGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTCTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTCATGAAATATAAGGGCCCTCAAACCAGCGAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACTATTCTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCAGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.99

Weight (kDa)

5.84

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 87	4.5e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 261	1.6e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
AatII	GACGTC	1 cut(s)	315
Acc36I	ACCTGC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	712
AciI	CCGC	2 cut(s)	100, 105
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 423, 647
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	6 cut(s)	75, 76, 248, 630, 794, 820
AgsI	TTSAA	5 cut(s)	179, 329, 605, 853, 925
AhdI	GACNNNNNGTC	1 cut(s)	708
AjnI	CCWGG	2 cut(s)	61, 465
AluBI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
AluI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
Alw21I	GWGCWC	2 cut(s)	94, 913
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	13, 423, 647
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	2 cut(s)	71, 93
AoxI	GGCC	3 cut(s)	350, 520, 547
ApaI	GGGCCC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	4 cut(s)	274, 520, 521, 547
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	2 cut(s)	71, 93
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	3 cut(s)	94, 524, 913
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	2 cut(s)	94, 913
BccI	CCATC	2 cut(s)	265, 623
BciT130I	CCWGG	2 cut(s)	63, 467
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	611, 759, 949
BfuAI	ACCTGC	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	63, 467
Bme18I	GGWCC	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	708
BmeT110I	CYCGRG	2 cut(s)	71, 93
BmgT120I	GGNCC	4 cut(s)	274, 520, 521, 547
BmiI	GGNNCC	3 cut(s)	67, 276, 522
BmrFI	CCNGG	2 cut(s)	63, 467
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	932
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	461, 488
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 476
BsaHI	GRCGYC	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 76, 248, 630, 794, 820
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	63, 467
BseGI	GGATG	2 cut(s)	835, 838
BseLI	CCNNNNNNNGG	6 cut(s)	75, 76, 248, 630, 794, 820
BseMII	CTCAG	2 cut(s)	96, 399
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	572
BshFI	GGCC	3 cut(s)	352, 522, 549
BshNI	GGYRCC	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	94, 913
BsiHKCI	CYCGRG	2 cut(s)	71, 93
BsiSI	CCGG	1 cut(s)	747
BslFI	GGGAC	3 cut(s)	92, 260, 465
BslI	CCNNNNNNNGG	6 cut(s)	75, 76, 248, 630, 794, 820
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	3 cut(s)	92, 260, 465
BsnI	GGCC	3 cut(s)	352, 522, 549
BsoBI	CYCGRG	2 cut(s)	71, 93
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	94, 524, 913
Bsp143I	GATC	4 cut(s)	5, 415, 639, 862
BspACI	CCGC	2 cut(s)	100, 105
BspANI	GGCC	3 cut(s)	352, 522, 549
BspCNI	CTCAG	2 cut(s)	95, 400
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	67, 276, 522
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	3 cut(s)	13, 423, 647
BspQI	GCTCTTC	1 cut(s)	828
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	775
BssMI	GATC	4 cut(s)	5, 415, 639, 862
BssNI	GRCGYC	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	63, 467
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	108, 828
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	82, 408, 540
BstF5I	GGATG	2 cut(s)	835, 838
BstKTI	GATC	4 cut(s)	8, 418, 642, 865
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	4 cut(s)	5, 415, 639, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
BstNI	CCWGG	2 cut(s)	63, 467
BstSCI	CCNGG	2 cut(s)	61, 465
BstSLI	GKGCMC	1 cut(s)	524
BstV2I	GAAGAC	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	352, 522, 549
BtsCI	GGATG	2 cut(s)	835, 838
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	1 cut(s)	785
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	4 cut(s)	274, 520, 521, 547
Csp6I	GTAC	1 cut(s)	763
CviAII	CATG	6 cut(s)	248, 292, 508, 676, 699, 866
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	3 cut(s)	82, 408, 540
DpnI	GATC	4 cut(s)	7, 417, 641, 864
DpnII	GATC	4 cut(s)	5, 415, 639, 862
DriI	GACNNNNNGTC	1 cut(s)	708
Eam1104I	CTCTTC	2 cut(s)	108, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	708
EarI	CTCTTC	2 cut(s)	108, 828
Ecl136II	GAGCTC	2 cut(s)	92, 911
Eco24I	GRGCYC	3 cut(s)	94, 524, 913
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	2 cut(s)	92, 911
Eco57I	CTGAAG	1 cut(s)	138
Eco88I	CYCGRG	2 cut(s)	71, 93
EcoICRI	GAGCTC	2 cut(s)	92, 911
EcoO109I	RGGNCCY	2 cut(s)	520, 521
EcoRII	CCWGG	2 cut(s)	61, 465
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	3 cut(s)	94, 524, 913
FaeI	CATG	6 cut(s)	251, 295, 511, 679, 702, 869
FaqI	GGGAC	3 cut(s)	92, 260, 465
FatI	CATG	6 cut(s)	247, 291, 507, 675, 698, 865
FblI	GTMKAC	1 cut(s)	712
FokI	GGATG	2 cut(s)	825, 842
FriOI	GRGCYC	3 cut(s)	94, 524, 913
FspBI	CTAG	3 cut(s)	611, 759, 949
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	2 cut(s)	461, 488
HaeIII	GGCC	3 cut(s)	352, 522, 549
HapII	CCGG	1 cut(s)	747
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	6 cut(s)	251, 295, 511, 679, 702, 869
HincII	GTYRAC	2 cut(s)	486, 713
HindII	GTYRAC	2 cut(s)	486, 713
HinfI	GANTC	6 cut(s)	80, 96, 436, 504, 662, 686
HpaII	CCGG	1 cut(s)	747
Hpy166II	GTNNAC	2 cut(s)	486, 713
Hpy188I	TCNGA	6 cut(s)	10, 157, 397, 409, 895, 906
Hpy188III	TCNNGA	2 cut(s)	440, 508
Hpy8I	GTNNAC	2 cut(s)	486, 713
HpyAV	CCTTC	5 cut(s)	162, 400, 506, 599, 663
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	3 cut(s)	159, 228, 312
HpyCH4V	TGCA	4 cut(s)	49, 589, 619, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
HpyF3I	CTNAG	3 cut(s)	82, 408, 540
HpySE526I	ACGT	3 cut(s)	159, 228, 312
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	6 cut(s)	251, 295, 511, 679, 702, 869
Kzo9I	GATC	4 cut(s)	5, 415, 639, 862
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	3 cut(s)	611, 759, 949
MaeII	ACGT	3 cut(s)	159, 228, 312
MaeIII	GTNAC	2 cut(s)	577, 797
MalI	GATC	4 cut(s)	7, 417, 641, 864
MbiI	CCGCTC	1 cut(s)	102
MboI	GATC	4 cut(s)	5, 415, 639, 862
MboII	GAAGA	4 cut(s)	125, 491, 845, 937
MhlI	GDGCHC	3 cut(s)	94, 524, 913
MluCI	AATT	3 cut(s)	218, 367, 420
MlyI	GAGTC	4 cut(s)	74, 105, 513, 671
Mph1103I	ATGCAT	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	2 cut(s)	141, 648
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	747
MspR9I	CCNGG	2 cut(s)	63, 467
MvaI	CCWGG	2 cut(s)	63, 467
MwoI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
NdeII	GATC	4 cut(s)	5, 415, 639, 862
NlaIII	CATG	6 cut(s)	251, 295, 511, 679, 702, 869
NlaIV	GGNNCC	3 cut(s)	67, 276, 522
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	436, 686
PleI	GAGTC	4 cut(s)	74, 104, 512, 670
PpsI	GAGTC	4 cut(s)	74, 104, 512, 670
PsiI	TTATAA	1 cut(s)	425
Psp124BI	GAGCTC	2 cut(s)	94, 913
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	61, 465
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	2 cut(s)	61, 465
PspN4I	GGNNCC	3 cut(s)	67, 276, 522
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	4 cut(s)	274, 520, 521, 547
PspXI	VCTCGAGB	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	1 cut(s)	252
SacI	GAGCTC	2 cut(s)	94, 913
SalI	GTCGAC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	2 cut(s)	141, 648
Sau3AI	GATC	4 cut(s)	5, 415, 639, 862
Sau96I	GGNCC	4 cut(s)	274, 520, 521, 547
SchI	GAGTC	4 cut(s)	74, 105, 513, 671
ScrFI	CCNGG	2 cut(s)	63, 467
SduI	GDGCHC	3 cut(s)	94, 524, 913
SfaNI	GCATC	1 cut(s)	847
Sfr274I	CTCGAG	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	163
SinI	GGWCC	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	56, 93, 455
SmoI	CTYRAG	3 cut(s)	56, 93, 455
Sse9I	AATT	3 cut(s)	218, 367, 420
SsiI	CCGC	2 cut(s)	100, 105
SspMI	CTAG	3 cut(s)	611, 759, 949
SstI	GAGCTC	2 cut(s)	94, 913
StyD4I	CCNGG	2 cut(s)	61, 465
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	3 cut(s)	162, 231, 315
TasI	AATT	3 cut(s)	218, 367, 420
TfiI	GAWTC	2 cut(s)	436, 686
Tru1I	TTAA	2 cut(s)	141, 648
Tru9I	TTAA	2 cut(s)	141, 648
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	5 cut(s)	236, 318, 374, 524, 846
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	611, 759, 949
ZraI	GACGTC	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.