Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

85418053 .. 85418882

Gene Structure 830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG553400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTCATGAAATATAAGGGGCCTCAAACCAGCGAGACTAAGCTGGGCTTAAACTCCCACACAGATAAGAACATTGTCACCATTCTGCACCAAAACCAAGTTGAAGGACTAGAGGTGCAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCAAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAAGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

172

Amino Acids

19.49

Weight (kDa)

6.05

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	23 - 117	3.8e-26	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	198, 362, 388
AgsI	TTSAA	3 cut(s)	173, 421, 493
AhdI	GACNNNNNGTC	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	3 cut(s)	15, 112, 479
AluI	AGCT	3 cut(s)	15, 112, 479
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	481
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	2 cut(s)	179, 517
BfuAI	ACCTGC	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	35
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	500
BpmI	CTGGAG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 362, 388
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	403, 406
BseLI	CCNNNNNNNGG	3 cut(s)	198, 362, 388
BseNI	ACTGG	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	227, 315
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	198, 362, 388
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	207, 430
BspANI	GGCC	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	207, 430
Bst2UI	CCWGG	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	381, 396
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	403, 406
BstKTI	GATC	2 cut(s)	210, 433
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	207, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 421, 485
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	2 cut(s)	403, 406
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	353
CaiI	CAGNNNCTG	1 cut(s)	467
CciI	TCATGA	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	4 cut(s)	76, 244, 267, 434
CviJI	RGCY	8 cut(s)	15, 91, 112, 117, 380, 424, 467, 479
CviKI_1	RGCY	8 cut(s)	15, 91, 112, 117, 380, 424, 467, 479
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	209, 432
DpnII	GATC	2 cut(s)	207, 430
DriI	GACNNNNNGTC	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	381, 396
Eam1105I	GACNNNNNGTC	1 cut(s)	276
EarI	CTCTTC	2 cut(s)	381, 396
Ecl136II	GAGCTC	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	481
FaeI	CATG	4 cut(s)	79, 247, 270, 437
FaiI	YATR	8 cut(s)	47, 77, 84, 245, 264, 268, 371, 435
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	75, 243, 266, 433
FblI	GTMKAC	1 cut(s)	280
FokI	GGATG	2 cut(s)	393, 410
FriOI	GRGCYC	1 cut(s)	481
FspBI	CTAG	2 cut(s)	179, 517
GsaI	CCCAGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	227, 315
Hin1II	CATG	4 cut(s)	79, 247, 270, 437
HincII	GTYRAC	2 cut(s)	54, 281
HindII	GTYRAC	2 cut(s)	54, 281
HinfI	GANTC	3 cut(s)	72, 230, 254
HpaII	CCGG	2 cut(s)	227, 315
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	54, 281
Hpy188I	TCNGA	2 cut(s)	463, 474
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	54, 281
HpyAV	CCTTC	3 cut(s)	74, 167, 231
HpyCH4V	TGCA	3 cut(s)	157, 187, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 421, 485
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	79, 247, 270, 437
Kzo9I	GATC	2 cut(s)	207, 430
LguI	GCTCTTC	1 cut(s)	396
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	179, 517
MaeIII	GTNAC	2 cut(s)	145, 365
MalI	GATC	2 cut(s)	209, 432
MboI	GATC	2 cut(s)	207, 430
MboII	GAAGA	4 cut(s)	59, 398, 413, 505
MhlI	GDGCHC	1 cut(s)	481
MlyI	GAGTC	2 cut(s)	81, 239
MnlI	CCTC	7 cut(s)	31, 102, 175, 316, 382, 420, 457
Mph1103I	ATGCAT	1 cut(s)	268
MseI	TTAA	2 cut(s)	119, 216
MspI	CCGG	2 cut(s)	227, 315
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	412, 421, 485
NdeII	GATC	2 cut(s)	207, 430
NlaIII	CATG	4 cut(s)	79, 247, 270, 437
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	268
PagI	TCATGA	1 cut(s)	75
PciSI	GCTCTTC	1 cut(s)	396
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	254
PleI	GAGTC	2 cut(s)	80, 238
PpsI	GAGTC	2 cut(s)	80, 238
Psp124BI	GAGCTC	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	481
SalI	GTCGAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	119, 216
Sau3AI	GATC	2 cut(s)	207, 430
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	81, 239
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	481
SfaNI	GCATC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SspMI	CTAG	2 cut(s)	179, 517
SstI	GAGCTC	1 cut(s)	481
StyD4I	CCNGG	1 cut(s)	33
TaqI	TCGA	6 cut(s)	70, 280, 301, 429, 438, 510
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	119, 216
Tru9I	TTAA	2 cut(s)	119, 216
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	92, 414
TspRI	CASTG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	2 cut(s)	179, 517
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.