FvH4_7g15790

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000834
Physical Location & Seq
Reverse (-)
13645341 .. 13645744
404 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15790.t1

Sequence Viewer

Length: 252 bp
ATGCTAGATGTATGGAGCAATGACACAGTCAAAGCTTGCCACCATCGAGTGAAACATTATTGCGGGGACAAGACTCGATACTCGTTGGGAATGTTTACGTGGAACAATGGAGTATTCGAAGTACCTAAAGAGCTAGTAGACGACATCCACCCTCTCCTCTACAACCAGTTCAAAGCCTATTGCGCTTGCTACGAATTAGGATCCACGCTTTTCTTTGCGATCCCATGGTTTAAATTTGTTGCAAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

84

Amino Acids

9.67

Weight (kDa)

6.88

Isoelectric Point (pI)

17.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 1 cut(s) 63
AclWI GGATC 3 cut(s) 195, 208, 214
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 172
AluBI AGCT 2 cut(s) 35, 133
AluI AGCT 2 cut(s) 35, 133
AlwI GGATC 3 cut(s) 195, 208, 214
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 117
BamHI GGATCC 1 cut(s) 200
BccI CCATC 1 cut(s) 51
BfaI CTAG 2 cut(s) 5, 134
BmiI GGNNCC 1 cut(s) 202
Bpu14I TTCGAA 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 200, 219
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 3 cut(s) 195, 208, 214
BspT104I TTCGAA 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 200, 219
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 37, 187
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 203, 222
BstMBI GATC 2 cut(s) 200, 219
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 37, 187
CfoI GCGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 225
CviJI RGCY 3 cut(s) 35, 133, 176
CviKI_1 RGCY 3 cut(s) 35, 133, 176
CviQI GTAC 1 cut(s) 122
DpnI GATC 2 cut(s) 202, 221
DpnII GATC 2 cut(s) 200, 219
DraI TTTAAA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 228
FaiI YATR 2 cut(s) 13, 226
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 224
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 138
FokI GGATG 1 cut(s) 131
FspBI CTAG 2 cut(s) 5, 134
GlaI GCGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 228
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 96, 139
Hpy8I GTNNAC 2 cut(s) 96, 139
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 1 cut(s) 228
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 200, 219
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 1 cut(s) 179
MaeI CTAG 2 cut(s) 5, 134
MaeII ACGT 1 cut(s) 98
MalI GATC 2 cut(s) 202, 221
MboI GATC 2 cut(s) 200, 219
MflI RGATCY 1 cut(s) 200
MluCI AATT 2 cut(s) 194, 233
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 2 cut(s) 162, 167
MseI TTAA 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 224
NdeII GATC 2 cut(s) 200, 219
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 202
NspV TTCGAA 1 cut(s) 117
PflFI GACNNNGTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Ppu21I YACGTR 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 200
PsyI GACNNNGTC 1 cut(s) 26
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 2 cut(s) 200, 219
SchI GAGTC 1 cut(s) 67
SetI ASST 4 cut(s) 37, 101, 127, 135
SfuI TTCGAA 1 cut(s) 117
Sse9I AATT 2 cut(s) 194, 233
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 5, 134
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 46, 76, 117
TasI AATT 2 cut(s) 194, 233
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 26
XapI RAATTY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 2 cut(s) 5, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.