Rh1DG272500

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000834
Physical Location & Seq
Reverse (-)
49260856 .. 49271514
10659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG272500.1

Sequence Viewer

Length: 294 bp
ATGGAGATCTCTTCGGGGCTTTTGACCGTCACGGCCGAGTTGAAGGTATGGAGCAATGACAGAGTGAAAGCTTGCCACCATCGAGTGAAGCACTGCGGGGACAAGACTCGATACTCACTGGGAATGTTTACCTTCAACAATGGAGTATTCCAAGTACCTAAAGAGCTAGTAGACGACAGCCACCCACTCCTCTACAACCAGTTCGACAGTCGTGGCTTCATAAGATTTTACACCACAGAGGAGGCCAAGAAGGCAAAGTCACCCACCAAAGCCTATTGCGGTATTGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

8.83

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 2 cut(s) 96, 279
AcoI YGGCCR 1 cut(s) 33
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 3 cut(s) 43, 136, 287
AluBI AGCT 2 cut(s) 71, 166
AluI AGCT 2 cut(s) 71, 166
AoxI GGCC 2 cut(s) 33, 243
AsuHPI GGTGA 1 cut(s) 252
BccI CCATC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 48
BfaI CTAG 2 cut(s) 167, 292
BglI GCCNNNNNGGC 1 cut(s) 251
BglII AGATCT 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 123, 199
Bse3DI GCAATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 123, 199
BseRI GAGGAG 2 cut(s) 179, 254
BseX3I CGGCCG 1 cut(s) 33
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 2 cut(s) 35, 245
BsiEI CGRYCG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 35, 245
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 2 cut(s) 96, 279
BspANI GGCC 2 cut(s) 35, 245
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 123, 199
BssMI GATC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 28, 209
Bst6I CTCTTC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 2 cut(s) 35, 245
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 116
Cac8I GCNNGC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 155
CviJI RGCY 8 cut(s) 19, 35, 71, 166, 180, 216, 245, 272
CviKI_1 RGCY 8 cut(s) 19, 35, 71, 166, 180, 216, 245, 272
CviQI GTAC 1 cut(s) 155
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 33
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EclXI CGGCCG 1 cut(s) 33
Eco52I CGGCCG 1 cut(s) 33
FaiI YATR 2 cut(s) 49, 221
FaqI GGGAC 1 cut(s) 113
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 171
FspBI CTAG 2 cut(s) 167, 292
HaeIII GGCC 2 cut(s) 35, 245
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 129, 172
Hpy8I GTNNAC 2 cut(s) 129, 172
HpyAV CCTTC 3 cut(s) 37, 142, 244
HpyCH4III ACNGT 2 cut(s) 28, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 2 cut(s) 104, 212
MaeI CTAG 2 cut(s) 167, 292
MaeIII GTNAC 2 cut(s) 28, 258
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 3
MflI RGATCY 1 cut(s) 6
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 3 cut(s) 200, 232, 235
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 28, 258
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 100
SetI ASST 5 cut(s) 48, 73, 134, 160, 168
SsiI CCGC 2 cut(s) 96, 279
SspMI CTAG 2 cut(s) 167, 292
TaaI ACNGT 2 cut(s) 28, 209
TaqI TCGA 3 cut(s) 82, 109, 204
TscAI CASTG 2 cut(s) 98, 123
TseFI GTSAC 2 cut(s) 28, 258
Tsp45I GTSAC 2 cut(s) 28, 258
TspDTI ATGAA 1 cut(s) 208
TspRI CASTG 2 cut(s) 98, 123
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 2 cut(s) 167, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.