Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

24137188 .. 24139281

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1199900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGGGTTTGACGATGCAAATGTGTATGAACAAGTTGAAAGCTTGACAAACACCTTGTGGCCTCAAGGAAACCCTAGATTTTGGCATCTCTCAAAGCTAATCATCACTTTCACCATACACACAGGGGCAGTTGTGCGAAGCACATCCAAAGCCAAACAGGATCAAATAATCAGAAGGATGATTCTGGCGAGCTTGGGACTTGAAAACTACTTGGAGGAGCAAGTAGAATCAGCCAACTACCTTCTTCGAGTGATGAAATATAAAGGACCTCAAACCAAGGAAACTAAGTTGGGGATAAACGCTCACACAGACAAGAACATTGTCCCATTAATTTTGTATCAAAACCAAGTTGACGGGCTACAAGTGGAAACAAAAGCTGGCAAATGGATCAATGACAAGCCTTCATCACCGCACTCTTTCATCGCCATGATTGGCGATTCTCTTTACGCATGGACAAACGGTCGACTACGTTCTCCATATTATAGAGTGATGATGAGTGGAAATGAGGCTAGGTACTCAACTGGATTGTTCTCTATCCCAAAGGAAGGTTACATTACGAAAGCCCCGGAGGAGGTTGTGGATGAAGAGCACCCTTTGCTTTTTAAGCCCCTTGATCACGTTGAATTTCTAGGGTTCTACTACACGGAGGCTGGCCAGTTGGCTTTGTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

225

Amino Acids

25.49

Weight (kDa)

6.31

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	82 - 178	1.5e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	463, 668
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	2 cut(s)	168, 395
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	623
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	545, 571
AgsI	TTSAA	3 cut(s)	38, 203, 623
AhdI	GACNNNNNGTC	1 cut(s)	459
AluBI	AGCT	4 cut(s)	42, 97, 192, 377
AluI	AGCT	4 cut(s)	42, 97, 192, 377
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	168, 395
AoxI	GGCC	2 cut(s)	59, 652
ApoI	RAATTY	1 cut(s)	623
AseI	ATTAAT	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	2 cut(s)	103, 399
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	591
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	566
BfaI	CTAG	3 cut(s)	75, 510, 629
Bme1390I	CCNGG	1 cut(s)	566
Bme18I	GGWCC	1 cut(s)	266
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	2 cut(s)	4, 94
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	276, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 571
Bse1I	ACTGG	2 cut(s)	526, 655
BseDI	CCNNGG	2 cut(s)	276, 564
BseGI	GGATG	3 cut(s)	143, 183, 586
BseLI	CCNNNNNNNGG	2 cut(s)	545, 571
BseNI	ACTGG	2 cut(s)	526, 655
BseRI	GAGGAG	2 cut(s)	230, 584
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	2 cut(s)	61, 654
BsiEI	CGRYCG	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	2 cut(s)	210, 308
BslI	CCNNNNNNNGG	2 cut(s)	545, 571
BsmFI	GGGAC	2 cut(s)	210, 308
BsnI	GGCC	2 cut(s)	61, 654
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	160, 387, 613
BspACI	CCGC	1 cut(s)	410
BspANI	GGCC	2 cut(s)	61, 654
BspPI	GGATC	2 cut(s)	168, 395
BspQI	GCTCTTC	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	526, 655
BssECI	CCNNGG	2 cut(s)	276, 564
BssMI	GATC	3 cut(s)	160, 387, 613
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	595
BstC8I	GCNNGC	3 cut(s)	190, 379, 652
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	143, 183, 586
BstKTI	GATC	3 cut(s)	163, 390, 616
BstMBI	GATC	3 cut(s)	160, 387, 613
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	2 cut(s)	595, 604
BstSCI	CCNGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	61, 654
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	143, 183, 586
Cac8I	GCNNGC	3 cut(s)	190, 379, 652
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	2 cut(s)	427, 450
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	162, 389, 615
DpnII	GATC	3 cut(s)	160, 387, 613
DraIII	CACNNNGTG	1 cut(s)	57
DriI	GACNNNNNGTC	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	579
Eam1105I	GACNNNNNGTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	430, 453
FaiI	YATR	8 cut(s)	27, 116, 261, 428, 451, 478, 483, 673
FaqI	GGGAC	2 cut(s)	210, 308
FatI	CATG	2 cut(s)	426, 449
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	2 cut(s)	463, 668
FokI	GGATG	3 cut(s)	130, 190, 593
FspBI	CTAG	3 cut(s)	75, 510, 629
HaeIII	GGCC	2 cut(s)	61, 654
HapII	CCGG	1 cut(s)	566
Hin1II	CATG	2 cut(s)	430, 453
HincII	GTYRAC	2 cut(s)	352, 464
HindII	GTYRAC	2 cut(s)	352, 464
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	3 cut(s)	181, 227, 437
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	103, 399
Hpy166II	GTNNAC	3 cut(s)	352, 464, 669
Hpy188I	TCNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	352, 464, 669
HpyAV	CCTTC	4 cut(s)	168, 251, 411, 539
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	469, 618
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	595, 604
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	2 cut(s)	469, 618
Hsp92II	CATG	2 cut(s)	430, 453
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	3 cut(s)	160, 387, 613
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	108, 143, 170, 363, 507, 579, 636, 668
LweI	GCATC	2 cut(s)	4, 94
MaeI	CTAG	3 cut(s)	75, 510, 629
MaeII	ACGT	2 cut(s)	469, 618
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	162, 389, 615
MboI	GATC	3 cut(s)	160, 387, 613
MboII	GAAGA	2 cut(s)	236, 596
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	2 cut(s)	330, 623
MluNI	TGGCCA	1 cut(s)	654
MnlI	CCTC	7 cut(s)	72, 208, 279, 499, 562, 565, 640
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	2 cut(s)	329, 603
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	595, 604
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	160, 387, 613
NlaIII	CATG	2 cut(s)	430, 453
PciSI	GCTCTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	181, 227, 437
PpuMI	RGGWCCY	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	425
SalI	GTCGAC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	329, 603
Sau3AI	GATC	3 cut(s)	160, 387, 613
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	2 cut(s)	4, 94
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	2 cut(s)	330, 623
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	3 cut(s)	75, 510, 629
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	472, 621
TaqI	TCGA	2 cut(s)	247, 463
TasI	AATT	2 cut(s)	330, 623
TfiI	GAWTC	3 cut(s)	181, 227, 437
Tru1I	TTAA	2 cut(s)	329, 603
Tru9I	TTAA	2 cut(s)	329, 603
TspDTI	ATGAA	5 cut(s)	42, 269, 393, 409, 597
TspGWI	ACGGA	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	329
XapI	RAATTY	1 cut(s)	623
XmiI	GTMKAC	2 cut(s)	463, 668
XspI	CTAG	3 cut(s)	75, 510, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.