Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

31204520 .. 31206230

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTCCCACTATATGAGAGCATGGGTATTGATGAAGCAAACGTCTATGGACAAGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCACAGGATTGTTTTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGTTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTACTCAGAGGCTGGTCAGAGAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

102

Amino Acids

11.54

Weight (kDa)

5.64

Isoelectric Point (pI)

22.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	152, 178
AgsI	TTSAA	2 cut(s)	211, 283
AhdI	GACNNNNNGTC	1 cut(s)	66
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	271
AlwNI	CAGNNNCTG	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	117, 307
BfuAI	ACCTGC	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 178
BseGI	GGATG	2 cut(s)	193, 196
BseLI	CCNNNNNNNGG	2 cut(s)	152, 178
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	152, 178
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	143
BspQI	GCTCTTC	1 cut(s)	186
BssMI	GATC	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	193, 196
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 211, 275
BstV2I	GAAGAC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	193, 196
BveI	ACCTGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	3 cut(s)	22, 57, 224
CviJI	RGCY	5 cut(s)	116, 170, 214, 257, 269
CviKI_1	RGCY	5 cut(s)	116, 170, 214, 257, 269
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	186
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	3 cut(s)	25, 60, 227
FaiI	YATR	7 cut(s)	13, 15, 23, 48, 58, 161, 225
FatI	CATG	3 cut(s)	21, 56, 223
FblI	GTMKAC	1 cut(s)	70
FokI	GGATG	2 cut(s)	183, 200
FriOI	GRGCYC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	117, 307
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	3 cut(s)	25, 60, 227
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	253, 264
Hpy8I	GTNNAC	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 211, 275
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	25, 60, 227
Kzo9I	GATC	1 cut(s)	220
LguI	GCTCTTC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	114, 118, 138, 186, 243
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	117, 307
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	203, 295
MhlI	GDGCHC	1 cut(s)	271
MnlI	CCTC	5 cut(s)	106, 169, 172, 210, 247
MspI	CCGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	202, 211, 275
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	25, 60, 227
NlaIV	GGNNCC	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
Psp124BI	GAGCTC	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	5 cut(s)	45, 122, 157, 183, 271
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	117, 307
SstI	GAGCTC	1 cut(s)	271
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	70, 91, 219, 228
TspDTI	ATGAA	2 cut(s)	48, 204
VpaK11BI	GGWCC	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	2 cut(s)	117, 307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.