Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

58030224 .. 58034494

Gene Structure 4271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG387900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAATCACAGCAACTATGAAAAACGACGTCCTCAAGGAGAACAGAGTGTGCTCGTCGGAGAAGCAATACGATTCTTCCTCGTCTTCGTGGTCTATGGGATTATGGAAGGCATGGAGTAATGACAGAATATTTTCTCCGAACCACCGAGTTGTAATGAGCACTGGGAATGAAAACGAAGCAAGATACTCTATGGCACAATTTGCATTTAGCAATGGCGAGATACGAGTGCCTGATGAGCTTGTTGATGACGAACACCCCTTACGCTACAAGCCTTTTGATCATCCCGGGTTACTGCGTTTCTTTCGTACTGCTGAAGACAACTCGAACTCTGCTATAAAAGCCTATTGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

119

Amino Acids

13.59

Weight (kDa)

5.88

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	310
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Alw21I	GWGCWC	2 cut(s)	56, 164
Ama87I	CYCGRG	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	133
AsuC2I	CCSGG	2 cut(s)	288, 289
AvaI	CYCGRG	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	78, 324
Bbv12I	GWGCWC	2 cut(s)	56, 164
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	288, 289
Bme1390I	CCNGG	2 cut(s)	288, 289
BmeT110I	CYCGRG	1 cut(s)	287
BmrFI	CCNGG	2 cut(s)	288, 289
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	78, 324
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	2 cut(s)	288, 289
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	169
BsiHKAI	GWGCWC	2 cut(s)	56, 164
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	56, 164
Bsp143I	GATC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 203, 238, 341
BstSCI	CCNGG	2 cut(s)	286, 287
BstV2I	GAAGAC	2 cut(s)	78, 324
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	162
Cfr9I	CCCGGG	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	114
CviJI	RGCY	3 cut(s)	241, 274, 344
CviKI_1	RGCY	3 cut(s)	241, 274, 344
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	287
FaeI	CATG	1 cut(s)	117
FaiI	YATR	6 cut(s)	20, 98, 106, 115, 194, 338
FatI	CATG	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	280
FokI	GGATG	1 cut(s)	270
HapII	CCGG	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	117
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	61, 141
Hpy99I	CGWCG	2 cut(s)	32, 61
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 203, 238, 341
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	3 cut(s)	150, 246, 301
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	291
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	69, 78, 329
MhlI	GDGCHC	2 cut(s)	56, 164
MluCI	AATT	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	2 cut(s)	44, 91
MroXI	GAANNNNTTC	1 cut(s)	133
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	288, 289
MwoI	GCNNNNNNNGC	4 cut(s)	11, 203, 238, 341
NciI	CCSGG	2 cut(s)	288, 289
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	74
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	288, 289
SduI	GDGCHC	2 cut(s)	56, 164
SetI	ASST	2 cut(s)	33, 243
SmaI	CCCGGG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	200
SspI	AATATT	1 cut(s)	132
StyD4I	CCNGG	2 cut(s)	286, 287
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	35, 186
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	1 cut(s)	169
XmaI	CCCGGG	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	133
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.