Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

64334604 .. 64335260

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0467100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAACCACCGGAGAACACCAGCGCCGCCCTCTCCTCGGGCTCCCCCGCCTCCACCGCCGAGAAGCTCCAGAACGCCATCCGCCTCCTCGAGTCCCAGCTCCGCTCCGAGGTCCTCTCCCGCCACTCCGACCTCCTCTCCCAGCTCTCCTCTCTCCAGCACGCCGACCACGCCCTCTCCACCGTCCACACCCGATCTGAGCTCTGCGACCCCCTTCGCTCCATCACCGCCCTCACTCTCCAGCTCTCCAACCTCCACGCCACCTCCGAGCTCCTCCACCACACCCTCTGCGCCCTCCGCCTCTCCAAGAAGCTCCGCGACCTCGCCGCCGACCCCGAGAAGATCGATCTCGCCAAGGCCGCCCAGCTGCATTGCGAGATCTTGGCGCTCTACGACGAGTACGATCTCTCCGGCATCGAAGTCGTCGAGGAGGAGCTCGGCTGGGTCAGAGAGACCGGCGACAAGTTGCGCGGCGAGGCCATGAAGGCGTTGGAGCTAGGGATGGAGGGGTTGAATCAGGGGGAGGTGGCCATCAGGTTGCAGGTGTTCTCCGGTGGTTGCAGAGGGAAGAAGAGAGAGGGAGCGAGAGGTCAGGGGAGAGAGAGAAGGAGGGAGAGAGAAAATATAAAAAAAAAGGGAGAAAAATTAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

218

Amino Acids

24.15

Weight (kDa)

7.74

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG5_N	PF10392	12 - 105	3.4e-10	Conserved oligomeric Golgi complex subunit 5, N-terminal
COG5_C	PF20649	136 - 183	1.6e-06	Conserved oligomeric Golgi complex subunit 5, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	2 cut(s)	318, 471
AcoI	YGGCCR	1 cut(s)	528
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	37, 109
AgsI	TTSAA	1 cut(s)	514
Alw21I	GWGCWC	3 cut(s)	204, 273, 438
Alw26I	GTCTC	1 cut(s)	446
Ama87I	CYCGRG	3 cut(s)	37, 89, 335
AoxI	GGCC	3 cut(s)	357, 477, 528
ApeKI	GCWGC	1 cut(s)	367
AspLEI	GCGC	4 cut(s)	26, 293, 388, 471
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	3 cut(s)	37, 89, 335
AvaII	GGWCC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	530
BanII	GRGCYC	4 cut(s)	44, 204, 273, 438
Bbv12I	GWGCWC	3 cut(s)	204, 273, 438
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	4 cut(s)	86, 230, 496, 539
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	1 cut(s)	497
BfoI	RGCGCY	2 cut(s)	27, 389
BfuAI	ACCTGC	1 cut(s)	532
BglI	GCCNNNNNGGC	1 cut(s)	485
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	5 cut(s)	27, 327, 360, 368, 472
BlsI	GCNGC	5 cut(s)	28, 328, 361, 369, 473
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	3 cut(s)	37, 89, 335
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	3 cut(s)	53, 140, 224
Bsa29I	ATCGAT	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	36, 108, 354
BsaWI	WCCGGW	2 cut(s)	10, 551
BsaXI	ACNNNNNCTCC	8 cut(s)	122, 152, 161, 191, 248, 278, 392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 109
Bse118I	RCCGGY	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	36, 108, 354
BseGI	GGATG	2 cut(s)	78, 507
BseLI	CCNNNNNNNGG	2 cut(s)	37, 109
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	7 cut(s)	25, 77, 125, 139, 263, 443, 446
BseXI	GCAGC	1 cut(s)	354
BseYI	CCCAGC	4 cut(s)	96, 141, 363, 441
Bsh1236I	CGCG	2 cut(s)	318, 471
BshFI	GGCC	3 cut(s)	359, 479, 530
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	3 cut(s)	204, 273, 438
BsiHKCI	CYCGRG	3 cut(s)	37, 89, 335
BsiSI	CCGG	4 cut(s)	11, 411, 456, 552
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	37, 109
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	359, 479, 530
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	3 cut(s)	37, 89, 335
Bsp1286I	GDGCHC	4 cut(s)	44, 204, 273, 438
Bsp143I	GATC	5 cut(s)	194, 342, 346, 378, 403
BspANI	GGCC	3 cut(s)	359, 479, 530
BspCNI	CTCAG	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	2 cut(s)	318, 471
BspLI	GGNNCC	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	446
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	36, 108, 354
BssMI	GATC	5 cut(s)	194, 342, 346, 378, 403
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	566
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	78, 507
BstFNI	CGCG	2 cut(s)	318, 471
BstH2I	RGCGCY	2 cut(s)	27, 389
BstHHI	GCGC	4 cut(s)	26, 293, 388, 471
BstKTI	GATC	5 cut(s)	197, 345, 349, 381, 406
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	5 cut(s)	194, 342, 346, 378, 403
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 170, 297, 359, 485
BstUI	CGCG	2 cut(s)	318, 471
BstV1I	GCAGC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	359, 479, 530
BsuTUI	ATCGAT	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	78, 507
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	4 cut(s)	26, 293, 388, 471
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	1 cut(s)	481
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	5 cut(s)	196, 344, 348, 380, 405
DpnII	GATC	5 cut(s)	194, 342, 346, 378, 403
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
EciI	GGCGGA	2 cut(s)	71, 287
Ecl136II	GAGCTC	3 cut(s)	202, 271, 436
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	4 cut(s)	44, 204, 273, 438
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	3 cut(s)	202, 271, 436
Eco88I	CYCGRG	3 cut(s)	37, 89, 335
EcoICRI	GAGCTC	3 cut(s)	202, 271, 436
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	4 cut(s)	44, 204, 273, 438
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	484
FaiI	YATR	2 cut(s)	482, 626
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	480
FauI	CCCGC	2 cut(s)	55, 128
Fnu4HI	GCNGC	5 cut(s)	27, 327, 360, 368, 472
FokI	GGATG	2 cut(s)	65, 514
FriOI	GRGCYC	4 cut(s)	44, 204, 273, 438
Fsp4HI	GCNGC	5 cut(s)	27, 327, 360, 368, 472
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	4 cut(s)	25, 292, 387, 470
GluI	GCNGC	5 cut(s)	27, 327, 360, 368, 472
GsaI	CCCAGC	4 cut(s)	100, 145, 367, 445
GsuI	CTGGAG	3 cut(s)	53, 140, 224
HaeII	RGCGCY	2 cut(s)	27, 389
HaeIII	GGCC	3 cut(s)	359, 479, 530
HapII	CCGG	4 cut(s)	11, 411, 456, 552
HhaI	GCGC	4 cut(s)	26, 293, 388, 471
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	4 cut(s)	24, 291, 386, 469
HinP1I	GCGC	4 cut(s)	24, 291, 386, 469
HinfI	GANTC	2 cut(s)	92, 514
HpaII	CCGG	4 cut(s)	11, 411, 456, 552
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	5 cut(s)	109, 130, 199, 268, 449
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	2 cut(s)	398, 428
HpyAV	CCTTC	3 cut(s)	224, 478, 600
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4V	TGCA	4 cut(s)	4, 370, 541, 561
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 170, 297, 359, 485
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	4 cut(s)	24, 291, 386, 469
Kzo9I	GATC	5 cut(s)	194, 342, 346, 378, 403
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	1 cut(s)	497
MalI	GATC	5 cut(s)	196, 344, 348, 380, 405
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	5 cut(s)	194, 342, 346, 378, 403
MboII	GAAGA	3 cut(s)	352, 580, 583
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	4 cut(s)	44, 204, 273, 438
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	1 cut(s)	644
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	153, 273, 471
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	4 cut(s)	11, 411, 456, 552
MvnI	CGCG	2 cut(s)	318, 471
MwoI	GCNNNNNNNGC	5 cut(s)	56, 170, 297, 359, 485
NdeII	GATC	5 cut(s)	194, 342, 346, 378, 403
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	85, 417
PaeR7I	CTCGAG	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 399, 423
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	5 cut(s)	28, 328, 361, 369, 473
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	112
Psp124BI	GAGCTC	3 cut(s)	204, 273, 438
Psp5II	RGGWCCY	1 cut(s)	112
PspFI	CCCAGC	4 cut(s)	96, 141, 363, 441
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PspXI	VCTCGAGB	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SacI	GAGCTC	3 cut(s)	204, 273, 438
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	5 cut(s)	27, 327, 360, 368, 472
Sau3AI	GATC	5 cut(s)	194, 342, 346, 378, 403
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	4 cut(s)	44, 204, 273, 438
SfaNI	GCATC	1 cut(s)	423
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	644
SspMI	CTAG	1 cut(s)	497
SstI	GAGCTC	3 cut(s)	204, 273, 438
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	4 cut(s)	90, 345, 417, 426
TasI	AATT	1 cut(s)	644
TauI	GCSGC	4 cut(s)	29, 329, 362, 474
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TseI	GCWGC	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.