Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

19669005 .. 19670427

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G52820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTTCCGAAACTCCTCTTCTTCCCCTTCGCCTTCCGGTCATCGATTTCTCAAACAAAAACCTCAAACCAGGAGAGCCCGAATGGGACTTAACCAGAGCTGATGTCCAGAAAGCTCTACAAGACTATGGTTACTTCGAGGCCTCTTTCGATAGAATCCCTTTTGAGCTACGGAAATCGGTTTTCGGGGCCTTGGAAGAGCTTTTCGACTTACCTTTGCAGACCAAACTGAGAAACGTGTCCAAGAAACCATTCCATGGATACGTTGGTCAGTACCCGATGGTGCCACTGTACGAGAGCATGGGGATTGATGATTCTGATATTGCAGAGAAAGTAGACGCCTTTACAGAAAAACTATGGCCTCAAGGCAACATCAGTTTCAGCACAACAATCCAGTCGTTTTCTAAGAAGTTATCAGAGCTAGACATAACTATCAGAAGAATGATCATGGAGAGCTTCGGACTCGATAAATACATCGATGAACATCTTCACTCAACGAATTACCTCCTGCGAGTAATGAAGTACAAAGGACCTGATACAGAGGAAACAAAAGTGGGGCTAAACGCTCATACTGATAAAAACATAGTCACTATACTTTACCAGAACCATGTTGAGGGTCTAGAGGTGCAGACCAAAGACAAGAACTGGATCAAAGTGAAGCCAACACAAGACTCTTTCACCGTCATGATTGGAGATTCTCTCTATGCATTGCTAAATGGTCGACTACACTCTCCTTATCACCGTGTCATGATGACGGGAACAGAGACAAGATACTCCCTCGGATTATTCTCGATACCAAAAGCAGGACACATTGTGAGTTCACCAGATGAACTCGTTGACGAAGAGCATCCTCGACTATTTAAGCCCTTTGACCATGTCGAATTCCTTCAATTCTACTACACAGAAGCTGGACAAAGATCTCAATCTGCTCTCAAAACTTACTGTGGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

36.42

Weight (kDa)

5.72

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 90	6.2e-11	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	172 - 238	3.3e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	336, 721
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	1 cut(s)	881
AcyI	GRCGYC	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	3 cut(s)	275, 293, 524
AfiI	CCNNNNNNNGG	3 cut(s)	257, 613, 803
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	890
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	7 cut(s)	101, 116, 169, 202, 421, 456, 908
AluI	AGCT	7 cut(s)	101, 116, 169, 202, 421, 456, 908
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	3 cut(s)	141, 189, 359
ApoI	RAATTY	1 cut(s)	881
Asp700I	GAANNNNTTC	3 cut(s)	251, 486, 885
AspS9I	GGNCC	2 cut(s)	189, 530
AsuHPI	GGTGA	3 cut(s)	670, 731, 813
AvaII	GGWCC	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	81
BccI	CCATC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	254
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	2 cut(s)	422, 620
BfuI	GTATCC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	917
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	189, 530
BmiI	GGNNCC	3 cut(s)	7, 190, 285
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	856
BplI	GAGNNNNNCTC	2 cut(s)	684, 716
BpuEI	CTTGAG	1 cut(s)	348
Bsa29I	ATCGAT	2 cut(s)	45, 477
BsaBI	GATNNNNATC	2 cut(s)	483, 922
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	192, 256, 778
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 613, 803
Bse1I	ACTGG	2 cut(s)	394, 650
Bse3DI	GCAATG	1 cut(s)	707
Bse8I	GATNNNNATC	2 cut(s)	483, 922
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	2 cut(s)	45, 477
BseDI	CCNNGG	3 cut(s)	192, 256, 778
BseGI	GGATG	1 cut(s)	847
BseJI	GATNNNNATC	2 cut(s)	483, 922
BseLI	CCNNNNNNNGG	3 cut(s)	257, 613, 803
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	394, 650
BseRI	GAGGAG	1 cut(s)	6
BsgI	GTGCAG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	143, 191, 361
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	2 cut(s)	45, 477
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	257, 613, 803
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	3 cut(s)	143, 191, 361
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	444, 648, 917
Bsp19I	CCATGG	1 cut(s)	256
BspANI	GGCC	3 cut(s)	143, 191, 361
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	2 cut(s)	45, 477
BspHI	TCATGA	2 cut(s)	684, 747
BspLI	GGNNCC	3 cut(s)	7, 190, 285
BspPI	GGATC	1 cut(s)	656
BspQI	GCTCTTC	2 cut(s)	192, 837
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	707
BsrI	ACTGG	2 cut(s)	394, 650
BssECI	CCNNGG	3 cut(s)	192, 256, 778
BssMI	GATC	3 cut(s)	444, 648, 917
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	192, 256
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	4 cut(s)	291, 682, 743, 944
Bst6I	CTCTTC	3 cut(s)	24, 192, 837
BstACI	GRCGYC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	230, 405
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	847
BstKTI	GATC	3 cut(s)	447, 651, 920
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	3 cut(s)	444, 648, 917
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	917
BstYI	RGATCY	1 cut(s)	917
Bsu15I	ATCGAT	2 cut(s)	45, 477
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	143, 191, 361
BsuTUI	ATCGAT	2 cut(s)	45, 477
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	847
BtsIMutI	CAGTG	1 cut(s)	287
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	2 cut(s)	684, 747
Cfr13I	GGNCC	2 cut(s)	189, 530
ClaI	ATCGAT	2 cut(s)	45, 477
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	274, 292, 523
CviAII	CATG	7 cut(s)	257, 301, 448, 608, 685, 748, 875
CviQI	GTAC	3 cut(s)	274, 292, 523
DdeI	CTNAG	2 cut(s)	230, 405
DpnI	GATC	3 cut(s)	446, 650, 919
DpnII	GATC	3 cut(s)	444, 648, 917
DraIII	CACNNNGTG	1 cut(s)	814
Eam1104I	CTCTTC	3 cut(s)	24, 192, 837
EarI	CTCTTC	3 cut(s)	24, 192, 837
Eco130I	CCWWGG	2 cut(s)	192, 256
Eco147I	AGGCCT	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	530
EcoO109I	RGGNCCY	2 cut(s)	189, 530
EcoRI	GAATTC	1 cut(s)	881
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	192, 256
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	192, 256
FaeI	CATG	7 cut(s)	260, 304, 451, 611, 688, 751, 878
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	256, 300, 447, 607, 684, 747, 874
FbaI	TGATCA	1 cut(s)	444
FblI	GTMKAC	2 cut(s)	336, 721
FokI	GGATG	1 cut(s)	834
FriOI	GRGCYC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	422, 620
HaeIII	GGCC	3 cut(s)	143, 191, 361
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	7 cut(s)	260, 304, 451, 611, 688, 751, 878
HincII	GTYRAC	2 cut(s)	722, 838
HindII	GTYRAC	2 cut(s)	722, 838
HinfI	GANTC	6 cut(s)	156, 314, 462, 671, 695, 948
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	3 cut(s)	670, 731, 813
Hpy166II	GTNNAC	4 cut(s)	337, 722, 821, 838
Hpy188I	TCNGA	6 cut(s)	10, 319, 418, 437, 461, 782
Hpy188III	TCNNGA	5 cut(s)	109, 620, 685, 748, 790
Hpy8I	GTNNAC	4 cut(s)	337, 722, 821, 838
HpyAV	CCTTC	3 cut(s)	38, 44, 896
HpyCH4III	ACNGT	4 cut(s)	291, 682, 743, 944
HpyCH4IV	ACGT	2 cut(s)	237, 264
HpyCH4V	TGCA	4 cut(s)	220, 326, 628, 707
HpyF3I	CTNAG	2 cut(s)	230, 405
HpySE526I	ACGT	2 cut(s)	237, 264
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	7 cut(s)	260, 304, 451, 611, 688, 751, 878
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	444, 648, 917
LguI	GCTCTTC	2 cut(s)	192, 837
LweI	GCATC	1 cut(s)	856
MaeI	CTAG	2 cut(s)	422, 620
MaeII	ACGT	2 cut(s)	237, 264
MaeIII	GTNAC	2 cut(s)	131, 586
MalI	GATC	3 cut(s)	446, 650, 919
MboI	GATC	3 cut(s)	444, 648, 917
MboII	GAAGA	6 cut(s)	11, 14, 209, 450, 479, 854
MflI	RGATCY	1 cut(s)	917
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	499, 881, 890
MlyI	GAGTC	2 cut(s)	456, 665
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	3 cut(s)	251, 486, 885
MseI	TTAA	2 cut(s)	92, 861
MslI	CAYNNNNRTG	1 cut(s)	683
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	444, 648, 917
NlaIII	CATG	7 cut(s)	260, 304, 451, 611, 688, 751, 878
NlaIV	GGNNCC	3 cut(s)	7, 190, 285
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	709
PagI	TCATGA	2 cut(s)	684, 747
PceI	AGGCCT	1 cut(s)	143
PciSI	GCTCTTC	2 cut(s)	192, 837
PdmI	GAANNNNTTC	3 cut(s)	251, 486, 885
PfeI	GAWTC	4 cut(s)	156, 314, 695, 948
PflFI	GACNNNGTC	1 cut(s)	875
PflMI	CCANNNNNTGG	1 cut(s)	257
PleI	GAGTC	2 cut(s)	456, 665
PpsI	GAGTC	2 cut(s)	456, 665
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	3 cut(s)	7, 190, 285
PspPI	GGNCC	2 cut(s)	189, 530
PspPPI	RGGWCCY	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	1 cut(s)	917
PsyI	GACNNNGTC	1 cut(s)	875
RsaI	GTAC	3 cut(s)	275, 293, 524
RsaNI	GTAC	3 cut(s)	274, 292, 523
RseI	CAYNNNNRTG	1 cut(s)	683
SalI	GTCGAC	1 cut(s)	720
SapI	GCTCTTC	2 cut(s)	192, 837
SaqAI	TTAA	2 cut(s)	92, 861
Sau3AI	GATC	3 cut(s)	444, 648, 917
Sau96I	GGNCC	2 cut(s)	189, 530
SchI	GAGTC	2 cut(s)	456, 665
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	1 cut(s)	856
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	499, 881, 890
SseBI	AGGCCT	1 cut(s)	143
SspMI	CTAG	2 cut(s)	422, 620
StuI	AGGCCT	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	192, 256
TaaI	ACNGT	4 cut(s)	291, 682, 743, 944
TaiI	ACGT	2 cut(s)	240, 267
TasI	AATT	3 cut(s)	499, 881, 890
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	156, 314, 695, 948
Tru1I	TTAA	2 cut(s)	92, 861
Tru9I	TTAA	2 cut(s)	92, 861
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	495, 533, 843
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	294
Tth111I	GACNNNGTC	1 cut(s)	875
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	881
XbaI	TCTAGA	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	336, 721
XmnI	GAANNNNTTC	3 cut(s)	251, 486, 885
XspI	CTAG	2 cut(s)	422, 620
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.