Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

85092715 .. 85094282

Gene Structure 1568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGATCAGAAACACCTCTCAAACTTCCCACCATAGATTTCTCCATGCAAAACCTCAAGCCGGGCACCACCGAGTGGGACTCAGCTTTGTTTAACAAAGTTCCTTCAGACGTTCGAAAAGGCATATTTGAAGCAACAGAAGAGCTTTTCGACCTCCCTTTACAAACCAAATTGCGAAACGTTTCTCAAAAGCCCTTTGATGGCTATGTCGGGCAATACCCCATGGTGCCCCTATATGAGAGCATGGGTATTGACGAAGCAACCGTCGATGGACAAGTTCAAAGTTTCACAAACATTTTTTGGCCTCAACAAAACCCAAATTTTAGCAAAACTGTTCATTCCTTCTCGGAGAAACTATCTGAGCTGGATCAAATTATAAGGAGAATGATTTTGGAGAGCTTGGGACTTGAGAAATACCTGGAGGAACACATAGGGTCAACAAACTACCTTCTTCGAGTCATGAAATATAAGGGCCCTCTAACCAACGAGACTAAGCTGGGCCTAAACTCCCACACAGATAAGAACATTGTCACCATTTTGCACCAAGACCAAGTTGAAGGACTAGTGGTGCAAACCAAAGATGGGAAATGGATCAATGTTAAACCTTCGCCGGAGTCATTTATCGCCATGATTGGCGATTCTCTCTATGCATGGACAAATGGTCGACTACATTCTCCACATCATCGAGTGATGATGACCGGAAATGAGGCTAGGTACTCCACTGGATTGTTCTCTATCCCAAAAGCAGGTTACATAATAAAAGCCCCAGAGGAGGCTGTGGATGAAGAGCATCCTCTGCTTTTCAAGCCATTCGATCATGTCGAGTTTCTTGGATTTTACTATTCTGAGGCTGGTCAGATAGCTCAATCTGCTTTGAAGACTTATTGTGGTGTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

300

Amino Acids

33.99

Weight (kDa)

5.51

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	152 - 245	1.4e-24	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	737
AccB1I	GGYRCC	2 cut(s)	65, 226
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	664
AclI	AACGTT	1 cut(s)	180
AclWI	GGATC	3 cut(s)	13, 375, 599
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	6 cut(s)	61, 75, 200, 582, 746, 772
AgsI	TTSAA	5 cut(s)	131, 281, 557, 805, 877
AhdI	GACNNNNNGTC	1 cut(s)	660
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	6 cut(s)	86, 145, 364, 399, 496, 863
AluI	AGCT	6 cut(s)	86, 145, 364, 399, 496, 863
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	3 cut(s)	13, 375, 599
AoxI	GGCC	3 cut(s)	302, 472, 499
ApaI	GGGCCC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
Asp700I	GAANNNNTTC	1 cut(s)	181
AspS9I	GGNCC	3 cut(s)	472, 473, 499
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	115
BaeGI	GKGCMC	3 cut(s)	68, 231, 476
BanI	GGYRCC	2 cut(s)	65, 226
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	884
BccI	CCATC	3 cut(s)	194, 263, 575
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	482
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	3 cut(s)	563, 711, 901
BfuAI	ACCTGC	1 cut(s)	737
Bme1390I	CCNGG	2 cut(s)	63, 419
BmeRI	GACNNNNNGTC	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	472, 473, 499
BmiI	GGNNCC	3 cut(s)	67, 228, 474
BmrFI	CCNGG	2 cut(s)	63, 419
BmsI	GCATC	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	884
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	2 cut(s)	41, 428
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 75, 200, 582, 746, 772
Bse1I	ACTGG	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	787, 790
BseLI	CCNNNNNNNGG	6 cut(s)	61, 75, 200, 582, 746, 772
BseMII	CTCAG	3 cut(s)	96, 351, 837
BseNI	ACTGG	1 cut(s)	727
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	3 cut(s)	68, 231, 476
BseYI	CCCAGC	1 cut(s)	496
BshFI	GGCC	3 cut(s)	304, 474, 501
BshNI	GGYRCC	2 cut(s)	65, 226
BsiSI	CCGG	3 cut(s)	62, 611, 699
BslFI	GGGAC	2 cut(s)	92, 417
BslI	CCNNNNNNNGG	6 cut(s)	61, 75, 200, 582, 746, 772
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	92, 417
BsnI	GGCC	3 cut(s)	304, 474, 501
Bsp119I	TTCGAA	1 cut(s)	115
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	68, 231, 476
Bsp143I	GATC	4 cut(s)	5, 367, 591, 814
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	3 cut(s)	304, 474, 501
BspCNI	CTCAG	3 cut(s)	95, 352, 838
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	67, 228, 474
BspMI	ACCTGC	1 cut(s)	737
BspPI	GGATC	3 cut(s)	13, 375, 599
BspQI	GCTCTTC	2 cut(s)	135, 780
BspT104I	TTCGAA	1 cut(s)	115
BspT107I	GGYRCC	2 cut(s)	65, 226
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	4 cut(s)	5, 367, 591, 814
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	265, 334
Bst6I	CTCTTC	2 cut(s)	135, 780
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstBI	TTCGAA	1 cut(s)	115
BstDEI	CTNAG	4 cut(s)	82, 360, 492, 846
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	787, 790
BstKTI	GATC	4 cut(s)	8, 370, 594, 817
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	5, 367, 591, 814
BstMWI	GCNNNNNNNGC	3 cut(s)	796, 805, 869
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	61, 417
BstSLI	GKGCMC	3 cut(s)	68, 231, 476
BstV2I	GAAGAC	1 cut(s)	884
BsuRI	GGCC	3 cut(s)	304, 474, 501
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	787, 790
BtsIMutI	CAGTG	1 cut(s)	720
BveI	ACCTGC	1 cut(s)	737
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	472, 473, 499
Csp6I	GTAC	1 cut(s)	715
CviAII	CATG	7 cut(s)	46, 223, 244, 460, 628, 651, 818
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	4 cut(s)	82, 360, 492, 846
DpnI	GATC	4 cut(s)	7, 369, 593, 816
DpnII	GATC	4 cut(s)	5, 367, 591, 814
DraIII	CACNNNGTG	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	660
Eam1104I	CTCTTC	2 cut(s)	135, 780
Eam1105I	GACNNNNNGTC	1 cut(s)	660
EarI	CTCTTC	2 cut(s)	135, 780
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	90
EcoO109I	RGGNCCY	2 cut(s)	472, 473
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	7 cut(s)	49, 226, 247, 463, 631, 654, 821
FaqI	GGGAC	2 cut(s)	92, 417
FatI	CATG	7 cut(s)	45, 222, 243, 459, 627, 650, 817
FblI	GTMKAC	1 cut(s)	664
FokI	GGATG	2 cut(s)	777, 794
FriOI	GRGCYC	1 cut(s)	476
FspBI	CTAG	3 cut(s)	563, 711, 901
GsaI	CCCAGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	304, 474, 501
HapII	CCGG	3 cut(s)	62, 611, 699
Hin1II	CATG	7 cut(s)	49, 226, 247, 463, 631, 654, 821
HincII	GTYRAC	2 cut(s)	438, 665
HindII	GTYRAC	2 cut(s)	438, 665
HinfI	GANTC	4 cut(s)	80, 456, 614, 638
HpaII	CCGG	3 cut(s)	62, 611, 699
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	438, 665
Hpy188I	TCNGA	6 cut(s)	10, 109, 349, 361, 847, 858
Hpy188III	TCNNGA	1 cut(s)	460
Hpy8I	GTNNAC	2 cut(s)	438, 665
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	114, 352, 458, 551, 615
HpyCH4III	ACNGT	2 cut(s)	265, 334
HpyCH4IV	ACGT	2 cut(s)	111, 180
HpyCH4V	TGCA	4 cut(s)	49, 541, 571, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	796, 805, 869
HpyF3I	CTNAG	4 cut(s)	82, 360, 492, 846
HpySE526I	ACGT	2 cut(s)	111, 180
Hsp92II	CATG	7 cut(s)	49, 226, 247, 463, 631, 654, 821
Kzo9I	GATC	4 cut(s)	5, 367, 591, 814
LguI	GCTCTTC	2 cut(s)	135, 780
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	3 cut(s)	563, 711, 901
MaeII	ACGT	2 cut(s)	111, 180
MaeIII	GTNAC	2 cut(s)	529, 749
MalI	GATC	4 cut(s)	7, 369, 593, 816
MboI	GATC	4 cut(s)	5, 367, 591, 814
MboII	GAAGA	4 cut(s)	152, 443, 797, 889
MhlI	GDGCHC	3 cut(s)	68, 231, 476
MluCI	AATT	3 cut(s)	170, 319, 372
MlyI	GAGTC	3 cut(s)	74, 465, 623
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	93, 600
MspI	CCGG	3 cut(s)	62, 611, 699
MspR9I	CCNGG	2 cut(s)	63, 419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	796, 805, 869
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	4 cut(s)	5, 367, 591, 814
NlaIII	CATG	7 cut(s)	49, 226, 247, 463, 631, 654, 821
NlaIV	GGNNCC	3 cut(s)	67, 228, 474
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	115
PagI	TCATGA	1 cut(s)	459
PciSI	GCTCTTC	2 cut(s)	135, 780
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 819
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	638
PflMI	CCANNNNNTGG	1 cut(s)	75
PleI	GAGTC	3 cut(s)	74, 464, 622
PpsI	GAGTC	3 cut(s)	74, 464, 622
PsiI	TTATAA	1 cut(s)	377
Psp1406I	AACGTT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	3 cut(s)	67, 228, 474
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	3 cut(s)	472, 473, 499
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SalI	GTCGAC	1 cut(s)	663
SapI	GCTCTTC	2 cut(s)	135, 780
SaqAI	TTAA	2 cut(s)	93, 600
Sau3AI	GATC	4 cut(s)	5, 367, 591, 814
Sau96I	GGNCC	3 cut(s)	472, 473, 499
SchI	GAGTC	3 cut(s)	74, 465, 623
ScrFI	CCNGG	2 cut(s)	63, 419
SduI	GDGCHC	3 cut(s)	68, 231, 476
SfaNI	GCATC	1 cut(s)	799
SfuI	TTCGAA	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	56, 407
SmoI	CTYRAG	2 cut(s)	56, 407
SpeI	ACTAGT	1 cut(s)	562
Sse9I	AATT	3 cut(s)	170, 319, 372
SspMI	CTAG	3 cut(s)	563, 711, 901
StyD4I	CCNGG	2 cut(s)	61, 417
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	265, 334
TaiI	ACGT	2 cut(s)	114, 183
TaqI	TCGA	8 cut(s)	115, 150, 267, 454, 664, 685, 813, 822
TasI	AATT	3 cut(s)	170, 319, 372
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	2 cut(s)	93, 600
Tru9I	TTAA	2 cut(s)	93, 600
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	326, 476, 798
TspRI	CASTG	1 cut(s)	727
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	3 cut(s)	563, 711, 901
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.