Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

161354 .. 161986

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgattggcgattctctctatgcatggacaaatggtcgactacattctccacatcatcgcgtgatgatgaccggaaatgaggctaggtactccactggattgttctctatcccaaaagcaggttacataataaaagccccagaggaggttgtggatgaagagcatcctctgcttttcaagccattcgatcatgtcgagtttcttggattttactattcagaggctggtcagagagctcaatctgctttgaagacttattgtggtgtccaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

91

Amino Acids

10.32

Weight (kDa)

6.17

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	119, 145
AgsI	TTSAA	2 cut(s)	178, 250
AhdI	GACNNNNNGTC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw21I	GWGCWC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	84, 274
BfuAI	ACCTGC	1 cut(s)	110
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 145
Bse1I	ACTGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	160, 163
BseLI	CCNNNNNNNGG	2 cut(s)	119, 145
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	119, 145
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	110
BspQI	GCTCTTC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	160, 163
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 178, 242
BstUI	CGCG	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	257
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	160, 163
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	24, 191
CviJI	RGCY	5 cut(s)	83, 137, 181, 224, 236
CviKI_1	RGCY	5 cut(s)	83, 137, 181, 224, 236
CviQI	GTAC	1 cut(s)	88
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	2 cut(s)	27, 194
FaiI	YATR	4 cut(s)	21, 25, 128, 192
FatI	CATG	2 cut(s)	23, 190
FblI	GTMKAC	1 cut(s)	37
FokI	GGATG	2 cut(s)	150, 167
FriOI	GRGCYC	1 cut(s)	238
FspBI	CTAG	2 cut(s)	84, 274
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	27, 194
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	11
HpaII	CCGG	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	220, 231
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 178, 242
Hsp92II	CATG	2 cut(s)	27, 194
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	5 cut(s)	81, 85, 105, 153, 210
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	84, 274
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	170, 262
MhlI	GDGCHC	1 cut(s)	238
MnlI	CCTC	5 cut(s)	73, 136, 139, 177, 214
Mph1103I	ATGCAT	1 cut(s)	25
MspI	CCGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	169, 178, 242
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	27, 194
NsiI	ATGCAT	1 cut(s)	25
PciSI	GCTCTTC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	89, 124, 150, 238
SfaNI	GCATC	1 cut(s)	172
SspMI	CTAG	2 cut(s)	84, 274
SstI	GAGCTC	1 cut(s)	238
TaqI	TCGA	3 cut(s)	37, 186, 195
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	84, 274
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.