Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Reverse (-)

1960495 .. 1961146

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03562.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCACATCTTCCCTTCCCTTCACAAAGAAAAGAAATCATCATCTCCTTCCACATTCCCACATTGTATATAATTTTCTCCATGGGTGAGGACGTTGATCATGATCAAGCACTACTAGTACCAGTTCTTGAATTTTCGAAGGAGTGTTTGGTCCCAAAGAAAGAGAGGAGTGAGGAATGGAGAGCTATGAGCACCAAAGTGAGAGAGGCATGTGAGAGTCATGGCTGCTTTCTGCTGTTGGTGCAGGAAGAGGTGATGCCGATGCGCTTACGTGAAGACAAGGTGATGGCCATGAAAGCTTTGTTTGATCTCGCTGAAGAGACCAAGCAGAAGCACACAATCCCCAGGGCTTACCAGAGCTACCAAGGCAAGTGCCCCATCATTCCCTTGAACGAAAGCTTGGGGATCGACAATGCATGCCAGCTTGATGTAGCTGAGTCCTTCACCAACCTCATGTGGCCTCAAGGGAACTCTTCTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

162

Amino Acids

18.6

Weight (kDa)

5.38

Isoelectric Point (pI)

58.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	40 - 123	1.3e-08	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	131, 391
AhlI	ACTAGT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	4 cut(s)	131, 163, 383, 415
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	185, 299, 360, 399, 424, 434
AluI	AGCT	6 cut(s)	185, 299, 360, 399, 424, 434
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	288, 458
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	98, 265, 295, 436
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	280, 386
BciT130I	CCWGG	1 cut(s)	346
BclI	TGATCA	2 cut(s)	97, 103
BcoDI	GTCTC	1 cut(s)	314
BcuI	ACTAGT	1 cut(s)	115
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	2 cut(s)	246, 252
BpiI	GAAGAC	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	81, 344, 345, 364
Bse1I	ACTGG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	4 cut(s)	81, 344, 345, 364
BseJI	GATNNNNATC	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	290, 460
BsiHKAI	GWGCWC	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	290, 460
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	194, 377
Bsp143I	GATC	4 cut(s)	97, 103, 307, 405
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	2 cut(s)	290, 460
BspCNI	CTCAG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	81, 344, 345, 364
BssMI	GATC	4 cut(s)	97, 103, 307, 405
BssT1I	CCWWGG	2 cut(s)	81, 364
Bst2UI	CCWGG	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	243, 312, 478
BstBAI	YACGTR	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	418, 422
BstDEI	CTNAG	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	4 cut(s)	100, 106, 310, 408
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	4 cut(s)	97, 103, 307, 405
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 296, 366
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	213, 420
BstSCI	CCNGG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	290, 460
BtgI	CCRYGG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	418, 422
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	7 cut(s)	82, 101, 210, 221, 292, 417, 454
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	4 cut(s)	99, 105, 309, 407
DpnII	GATC	4 cut(s)	97, 103, 307, 405
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	243, 312, 478
EarI	CTCTTC	3 cut(s)	243, 312, 478
Eco130I	CCWWGG	2 cut(s)	81, 364
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	81, 364
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	81, 364
FaeI	CATG	7 cut(s)	85, 104, 213, 224, 295, 420, 457
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	7 cut(s)	81, 100, 209, 220, 291, 416, 453
FbaI	TGATCA	2 cut(s)	97, 103
Fnu4HI	GCNGC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	290, 460
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	85, 104, 213, 224, 295, 420, 457
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HindIII	AAGCTT	2 cut(s)	297, 397
HinfI	GANTC	2 cut(s)	217, 437
HphI	GGTGA	4 cut(s)	98, 265, 295, 436
Hpy188III	TCNNGA	2 cut(s)	101, 128
HpyAV	CCTTC	5 cut(s)	25, 30, 58, 133, 451
HpyCH4IV	ACGT	2 cut(s)	93, 271
HpyCH4V	TGCA	2 cut(s)	244, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 296, 366
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	2 cut(s)	93, 271
Hsp92II	CATG	7 cut(s)	85, 104, 213, 224, 295, 420, 457
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	97, 103
Kzo9I	GATC	4 cut(s)	97, 103, 307, 405
LpnPI	CCDG	6 cut(s)	135, 230, 331, 358, 368, 434
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	246, 252
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	93, 271
MalI	GATC	4 cut(s)	99, 105, 309, 407
MboI	GATC	4 cut(s)	97, 103, 307, 405
MboII	GAAGA	4 cut(s)	260, 287, 329, 465
MhlI	GDGCHC	2 cut(s)	194, 377
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	72, 131
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	2 cut(s)	226, 446
MnlI	CCTC	7 cut(s)	82, 159, 166, 199, 244, 461, 471
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	241, 296, 366
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	97, 103, 307, 405
NlaIII	CATG	7 cut(s)	85, 104, 213, 224, 295, 420, 457
NlaIV	GGNNCC	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	2 cut(s)	213, 420
NspV	TTCGAA	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	420
PagI	TCATGA	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	2 cut(s)	225, 445
PpsI	GAGTC	2 cut(s)	225, 445
Ppu21I	YACGTR	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	4 cut(s)	97, 103, 307, 405
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	226, 446
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	194, 377
SfaNI	GCATC	2 cut(s)	246, 252
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	462
SmoI	CTYRAG	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	115
SphI	GCATGC	1 cut(s)	420
Sse9I	AATT	2 cut(s)	72, 131
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	81, 364
TaiI	ACGT	2 cut(s)	96, 274
TaqI	TCGA	2 cut(s)	137, 408
TasI	AATT	2 cut(s)	72, 131
TseI	GCWGC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	2 cut(s)	213, 420
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.