Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003514.1

Orthogroup ID

OG0000834

Physical Location & Seq

Genomic Coordinates Forward (+)

44075 .. 45541

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003514.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgggatcagaaacacctctcaaacttcccaccatagatttctccatgcaaaacctcaagccgggcaccaccgagtgggactcagttagagctggtgtccgctttgcactcgaagagtatggttgcttcgaggctttgtttaacaaagttccttcagacgttcgaaaatgcatatttgaagcaacagaagagcttttcgacctccctttacaaaccaaattgcgaaacgtttctcaaaagccctttcatggctatgtcgggcaataccccatggtgcccctatatgagagcatgggtattgaggaagcaaccgacgatcgacaagttcaaagtttcacaaacatattttggcctcaacaaaacccaaattttagcaaaactgttcattccttctcggagaaactatctgagctggatcaaattataaggagaatgattttggagagcttgggacttgagaaatacctggaggaacacatagggtcaacaaactaccttcttcgagttatgaaatataagggccctcaaaccagcgagactaagctgggcctaaactcccacacagataagaacattgtcaccattttgcaccaaaaccaagttgaaggactagaggtacaaaccaaagatgggaaatggatcaatgtcaaaccttcgccggagtcatttatcgccatgattggcgattctctctatgcatggacaaatggtcgactacattctccacatcatcgagtgatgatgaccggaaatgaggctaggtactccactggattgttctctatcccaaaagcaggttacataataaaagccccagaggaggttgtggatgaagagcatcctctgcttttcaagccattcgatcatgtcgagtttcttggattttactattcagaggctggtcagatagctcaatctgctttgaagacttactgtggtgtccaaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016143 GO:0016144 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

36.06

Weight (kDa)

5.62

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52820 AT1G52820
fragaria_vesca	FvH4_2g29991 FvH4_6g03562 FvH4_6g30760 FvH4_7g15790
malus_domestica	MD08G1138800.v1.1 MD15G1116900.v1.1 MD15G1295900.v1.1 MD17G1199200.v1.1 MD17G1199600.v1.1 MD17G1199900.v1.1
prunus_persica	Prupe.1G468100_v2.0.a1 Prupe.3G075700_v2.0.a1
pyrus_communis	pycom03g05610 pycom08g11710 pycom15g10530 pycom17g20410
rosa_chinensis	RchiOBHm_Chr2g0137211 RchiOBHm_Chr5g0019671 RchiOBHm_Chr5g0019681 RchiOBHm_Chr5g0079401 RchiOBHm_Chr5g0079891 RchiOBHm_Chr5g0080021
rosa_laevigata	RLG00000010287 RLG00000032460 RLG00000036841 RLG00000036845
rosa_multiflora	Rmu_sc0000595.1_g000050 Rmu_sc0000595.1_g000069 Rmu_sc0000894.1_g000038 Rmu_sc0001148.1_g000011 Rmu_sc0003514.1_g000008 Rmu_sc0008049.1_g000033
rosa_roxburghii	Rroxscaffold_1G00003130 Rroxscaffold_1G00003200 Rroxscaffold_1G00058430 Rroxscaffold_2G00107340
rosa_rugosa	Rorug04G0356200 Rorug04G0356300 Rorug05G0052500 Rorug05G0467100 Rorug05G0467800
rosa_samantha	Rh1DG272100 Rh1DG272500 Rh2AG387900 Rh2AG388100 Rh2CG375500 Rh2DG411100 Rh4DG058700 Rh5AG143200 Rh5AG520900 Rh5AG521300 Rh5BG141800 Rh5BG542900 Rh5CG153700 Rh5CG565700 Rh5CG566800 Rh5DG142300 Rh5DG142400 Rh5DG355000 Rh5DG355100 Rh5DG553400
rosa_wichuraiana	Rw2G031810 Rw5G012690 Rw5G048310 Rw5G048380 Rw6G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	425
Acc36I	ACCTGC	1 cut(s)	785
AccB1I	GGYRCC	2 cut(s)	65, 274
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	712
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	13, 423, 647
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	618, 764
AfiI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 630, 794, 820
AgsI	TTSAA	5 cut(s)	179, 329, 605, 853, 925
AhdI	GACNNNNNGTC	1 cut(s)	708
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
AluI	AGCT	6 cut(s)	92, 193, 412, 447, 544, 911
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	13, 423, 647
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	3 cut(s)	350, 520, 547
ApaI	GGGCCC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	520, 521, 547
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	163
BaeGI	GKGCMC	3 cut(s)	68, 279, 524
BanI	GGYRCC	2 cut(s)	65, 274
BanII	GRGCYC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	932
BccI	CCATC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	3 cut(s)	611, 759, 949
BfuAI	ACCTGC	1 cut(s)	785
Bme1390I	CCNGG	2 cut(s)	63, 467
BmeRI	GACNNNNNGTC	1 cut(s)	708
BmgT120I	GGNCC	3 cut(s)	520, 521, 547
BmiI	GGNNCC	3 cut(s)	67, 276, 522
BmrFI	CCNGG	2 cut(s)	63, 467
BmsI	GCATC	1 cut(s)	847
BpiI	GAAGAC	1 cut(s)	932
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	488
Bpu14I	TTCGAA	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	41, 476
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	746
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 630, 794, 820
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	835, 838
BseLI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 630, 794, 820
BseMII	CTCAG	2 cut(s)	96, 399
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	833
BseSI	GKGCMC	3 cut(s)	68, 279, 524
BseYI	CCCAGC	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	352, 522, 549
BshNI	GGYRCC	2 cut(s)	65, 274
BsiEI	CGRYCG	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	62, 659, 747
BslFI	GGGAC	2 cut(s)	92, 465
BslI	CCNNNNNNNGG	6 cut(s)	61, 75, 248, 630, 794, 820
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	92, 465
BsnI	GGCC	3 cut(s)	352, 522, 549
Bsp119I	TTCGAA	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	520
Bsp1286I	GDGCHC	3 cut(s)	68, 279, 524
Bsp143I	GATC	5 cut(s)	5, 316, 415, 639, 862
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	3 cut(s)	352, 522, 549
BspCNI	CTCAG	2 cut(s)	95, 400
BspLI	GGNNCC	3 cut(s)	67, 276, 522
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	3 cut(s)	13, 423, 647
BspQI	GCTCTTC	2 cut(s)	183, 828
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	2 cut(s)	65, 274
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	5 cut(s)	5, 316, 415, 639, 862
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	382, 935
Bst6I	CTCTTC	3 cut(s)	108, 183, 828
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	82, 408, 540
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	835, 838
BstKTI	GATC	5 cut(s)	8, 319, 418, 642, 865
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	5 cut(s)	5, 316, 415, 639, 862
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	61, 465
BstSLI	GKGCMC	3 cut(s)	68, 279, 524
BstV2I	GAAGAC	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	352, 522, 549
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	835, 838
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	1 cut(s)	785
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr13I	GGNCC	3 cut(s)	520, 521, 547
Csp6I	GTAC	2 cut(s)	617, 763
CviAII	CATG	7 cut(s)	46, 248, 271, 292, 676, 699, 866
CviQI	GTAC	2 cut(s)	617, 763
DdeI	CTNAG	3 cut(s)	82, 408, 540
DpnI	GATC	5 cut(s)	7, 318, 417, 641, 864
DpnII	GATC	5 cut(s)	5, 316, 415, 639, 862
DraIII	CACNNNGTG	1 cut(s)	75
DriI	GACNNNNNGTC	1 cut(s)	708
Eam1104I	CTCTTC	3 cut(s)	108, 183, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	708
EarI	CTCTTC	3 cut(s)	108, 183, 828
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	520, 521
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	2 cut(s)	173, 700
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	7 cut(s)	49, 251, 274, 295, 679, 702, 869
FaqI	GGGAC	2 cut(s)	92, 465
FatI	CATG	7 cut(s)	45, 247, 270, 291, 675, 698, 865
FblI	GTMKAC	1 cut(s)	712
FokI	GGATG	2 cut(s)	825, 842
FriOI	GRGCYC	1 cut(s)	524
FspBI	CTAG	3 cut(s)	611, 759, 949
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	352, 522, 549
HapII	CCGG	3 cut(s)	62, 659, 747
Hin1II	CATG	7 cut(s)	49, 251, 274, 295, 679, 702, 869
HincII	GTYRAC	2 cut(s)	486, 713
HindII	GTYRAC	2 cut(s)	486, 713
HinfI	GANTC	3 cut(s)	80, 662, 686
HpaII	CCGG	3 cut(s)	62, 659, 747
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	486, 713
Hpy188I	TCNGA	6 cut(s)	10, 157, 397, 409, 895, 906
Hpy8I	GTNNAC	2 cut(s)	486, 713
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	5 cut(s)	162, 400, 506, 599, 663
HpyCH4III	ACNGT	2 cut(s)	382, 935
HpyCH4IV	ACGT	2 cut(s)	159, 228
HpyCH4V	TGCA	5 cut(s)	49, 107, 171, 589, 698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
HpyF3I	CTNAG	3 cut(s)	82, 408, 540
HpySE526I	ACGT	2 cut(s)	159, 228
Hsp92II	CATG	7 cut(s)	49, 251, 274, 295, 679, 702, 869
Kzo9I	GATC	5 cut(s)	5, 316, 415, 639, 862
LguI	GCTCTTC	2 cut(s)	183, 828
LweI	GCATC	1 cut(s)	847
MaeI	CTAG	3 cut(s)	611, 759, 949
MaeII	ACGT	2 cut(s)	159, 228
MaeIII	GTNAC	2 cut(s)	577, 797
MalI	GATC	5 cut(s)	7, 318, 417, 641, 864
MboI	GATC	5 cut(s)	5, 316, 415, 639, 862
MboII	GAAGA	5 cut(s)	125, 200, 491, 845, 937
MhlI	GDGCHC	3 cut(s)	68, 279, 524
MluCI	AATT	3 cut(s)	218, 367, 420
MlyI	GAGTC	2 cut(s)	74, 671
Mph1103I	ATGCAT	2 cut(s)	173, 700
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	3 cut(s)	62, 659, 747
MspR9I	CCNGG	2 cut(s)	63, 467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	844, 853, 917
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	5 cut(s)	5, 316, 415, 639, 862
NlaIII	CATG	7 cut(s)	49, 251, 274, 295, 679, 702, 869
NlaIV	GGNNCC	3 cut(s)	67, 276, 522
NmuCI	GTSAC	1 cut(s)	577
NsiI	ATGCAT	2 cut(s)	173, 700
NspV	TTCGAA	1 cut(s)	163
PciSI	GCTCTTC	2 cut(s)	183, 828
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	75
Ple19I	CGATCG	1 cut(s)	319
PleI	GAGTC	2 cut(s)	74, 670
PpsI	GAGTC	2 cut(s)	74, 670
PsiI	TTATAA	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	67, 276, 522
PspOMI	GGGCCC	1 cut(s)	520
PspPI	GGNCC	3 cut(s)	520, 521, 547
PstNI	CAGNNNCTG	1 cut(s)	899
PvuI	CGATCG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	618, 764
RsaNI	GTAC	2 cut(s)	617, 763
RseI	CAYNNNNRTG	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	711
SapI	GCTCTTC	2 cut(s)	183, 828
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	5 cut(s)	5, 316, 415, 639, 862
Sau96I	GGNCC	3 cut(s)	520, 521, 547
SchI	GAGTC	2 cut(s)	74, 671
ScrFI	CCNGG	2 cut(s)	63, 467
SduI	GDGCHC	3 cut(s)	68, 279, 524
SfaNI	GCATC	1 cut(s)	847
SfuI	TTCGAA	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	56, 455
SmoI	CTYRAG	2 cut(s)	56, 455
Sse9I	AATT	3 cut(s)	218, 367, 420
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	3 cut(s)	611, 759, 949
StyD4I	CCNGG	2 cut(s)	61, 465
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	382, 935
TaiI	ACGT	2 cut(s)	162, 231
TasI	AATT	3 cut(s)	218, 367, 420
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	4 cut(s)	236, 374, 524, 846
TspRI	CASTG	1 cut(s)	775
Van91I	CCANNNNNTGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	712
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	3 cut(s)	611, 759, 949
Zsp2I	ATGCAT	2 cut(s)	173, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.